View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_26 (Length: 304)
Name: NF14356_low_26
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 7639725 - 7639980
Alignment:
| Q |
17 |
catacatcttgaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaa |
116 |
Q |
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| T |
7639725 |
catacatcttgaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaa |
7639824 |
T |
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| Q |
117 |
catatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatca |
216 |
Q |
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| T |
7639825 |
catatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatca |
7639924 |
T |
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| Q |
217 |
gaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
272 |
Q |
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| T |
7639925 |
gaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 7633013 - 7633263
Alignment:
| Q |
22 |
atcttgaagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatat |
121 |
Q |
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| T |
7633013 |
atcttgaagacgactggacattactttcagtgccttactgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatat |
7633112 |
T |
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| Q |
122 |
ccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagc |
221 |
Q |
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| T |
7633113 |
ccaatttattaagtttgttttaaaaaatgccagagttttagaagagatccggatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagc |
7633212 |
T |
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| Q |
222 |
cagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
272 |
Q |
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|||||| |||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
7633213 |
cagttggaagctgtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
47 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
107 |
Q |
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|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
47 |
ttcagtgccttgctgtttcaaatattctctcaa |
79 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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