View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_28 (Length: 293)
Name: NF14356_low_28
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 47709339 - 47709603
Alignment:
| Q |
15 |
aggtaaagttcagtttcctgatgtagtactttccttgttgtagatggttattgatttcacactacaggtaaatggtgtcgaccttccaaacttatggacc |
114 |
Q |
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| T |
47709339 |
aggtaaagttcagtttcctgatgtagtactttccttgttgtatatggttattgatttcacactacaggtaaatggtgtggaccttgcaaacttatggacc |
47709438 |
T |
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| Q |
115 |
cagttatgcaagaggttgctacaaattacactgatgttgagttcattaagcttggtgtggatgagttagtggatggtatgttacaaattaccctttactt |
214 |
Q |
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| T |
47709439 |
cagttatgcaagaggttgctacaaattacactgatgttgagttcattaagcttggtgtggatgagttagtggatattatgttacaaattaccctttactt |
47709538 |
T |
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| Q |
215 |
taactagtttataatttaatgtaaaagcaactatatgtaaggtttaattactcggtccatatcta |
279 |
Q |
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| T |
47709539 |
taactagtttataatttaatgtaaaagcaactatatgtaaggtttaattactcggtccatatcta |
47709603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 262
Target Start/End: Complemental strand, 16561078 - 16560851
Alignment:
| Q |
26 |
agtttcctgatgtagtactttcctt-gttgtagatggttattgatttcacactacaggtaaatggtgtcgaccttccaaacttatggacccagttatgca |
124 |
Q |
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| T |
16561078 |
agttttctgatgtagtatttttctttggtatagatggttattgatttcacagca-----aaatggtgtggaccttgcaaagttatggatccagttatgaa |
16560984 |
T |
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| Q |
125 |
agaggttgctacaaattacactgatgttgagttcattaagcttggtgtggatgagttagtggatggtatgttacaaattaccctttactttaactagttt |
224 |
Q |
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| T |
16560983 |
agattttgctgcaaaatacactgatgttgagttcattaagcttgatgttgatgaatta----atggtatgttacaaattatccttcac-ttaactagttt |
16560889 |
T |
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| Q |
225 |
ataatttaatgtaaaagcaactatatgtaaggtttaat |
262 |
Q |
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| T |
16560888 |
gttatttaatgtaaaagcaactttatgtaaggtttaat |
16560851 |
T |
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