View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_33 (Length: 280)

Name: NF14356_low_33
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_33
NF14356_low_33
[»] chr4 (1 HSPs)
chr4 (22-264)||(17464421-17464663)
[»] chr2 (4 HSPs)
chr2 (25-207)||(21516711-21516893)
chr2 (190-264)||(21516916-21516991)
chr2 (115-207)||(21512241-21512333)
chr2 (199-264)||(21512365-21512431)
[»] chr5 (1 HSPs)
chr5 (148-264)||(20054678-20054795)
[»] chr7 (1 HSPs)
chr7 (211-259)||(6530799-6530847)
[»] chr1 (1 HSPs)
chr1 (213-261)||(3363476-3363524)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 264
Target Start/End: Complemental strand, 17464663 - 17464421
Alignment:
Q  22 catggtctgaagtctcgatcgtgcacttttcagcttctcattacaaggcacgcacgttccctttcccagcagcacaccaaaacgtacagtcctgtgctaa 121  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| | |||| ||||||||    
T  17464663 catggtctgaagtctagatcgtgtacttttcagcttcacattacagggcacgcacgttccctttcccagcagcacgccaaaacgcatagtcatgtgctaa 17464564  T
Q  122 aacgcacggtcatgtgctcttttctttggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtcttgtttttcctcttg 221  Q
    ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  17464563 aacgcacggtcatgtgctcttttttctggaacgtgcgtttttgatacgcacggattggtcatgcagcatgctaaaacgcacggtttggtttttcctcttg 17464464  T
Q  222 ttttgctccttttcatccttcattcttgatcttttcttgccta 264  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  17464463 ttttgctccttttcatccttgattcttgatcttttcttgccta 17464421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 21516711 - 21516893
Alignment:
Q  25 ggtctgaagtctcgatcgtgcacttttcagcttctcattacaaggcacgcacgttccctttcccagcagcacaccaaaacgtacagtcctgtgctaaaac 124  Q
    |||||||||||  || ||||||||||||||||||||  |||| |||||||| | |||||||| |||||| || |||||||| |  |||  ||||||||||    
T  21516711 ggtctgaagtccagaccgtgcacttttcagcttctccatacagggcacgcatggtccctttctcagcagtacgccaaaacgcatggtctggtgctaaaac 21516810  T
Q  125 gcacggtcatgtgctcttttctttggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct 207  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| || ||||| ||| ||||    
T  21516811 gcacgggactgtgctcttttctttggaacgtgcgttttttatacgcacagattggtcctacagcacgccaaaacacacagtct 21516893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 21516916 - 21516991
Alignment:
Q  190 tgctaaaacgcacggtct-tgtttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgccta 264  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  21516916 tgctaaaacgcacggtctgtgtttttcatcttgtttttctccttttcatccttcattctttatcttttcttgccta 21516991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 21512241 - 21512333
Alignment:
Q  115 gtgctaaaacgcacggtcatgtgctcttttctttggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct 207  Q
    ||||||||||||||||    |||||||||||||||||||||| |||||| |||||  |||||||||| ||||||| |||||||||||| ||||    
T  21512241 gtgctaaaacgcacgggaccgtgctcttttctttggaacgtgtgtttttgatacgtgcggattggtcctgcagcacgctaaaacgcacagtct 21512333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 21512365 - 21512431
Alignment:
Q  199 gcacggtct-tgtttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgccta 264  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  21512365 gcacggtctgtgtttttcctcttgctttgctccttttcattcttcattcttgatcttttcttaccta 21512431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 20054795 - 20054678
Alignment:
Q  148 tggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct-tgtttttcctcttgttttgctccttttcatccttcattc 246  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  20054795 tggaacgtgtgctttttatacgcacggattggtcctgaagcatgctaaaacgcacgaaccgtgcttttcctcttgttttgctccttttcatccttcattc 20054696  T
Q  247 ttgatcttttcttgccta 264  Q
    ||||||||||||||||||    
T  20054695 ttgatcttttcttgccta 20054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 6530847 - 6530799
Alignment:
Q  211 ttttcctcttgttttgctccttttcatccttcattcttgatcttttctt 259  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  6530847 ttttcctcttgttttgctccttttcagccttcattcttgatcctttctt 6530799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 3363476 - 3363524
Alignment:
Q  213 ttcctcttgttttgctccttttcatccttcattcttgatcttttcttgc 261  Q
    |||||| |||||||||||||||| |||||||||| ||||| ||||||||    
T  3363476 ttcctcatgttttgctccttttcttccttcattcctgatcctttcttgc 3363524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University