View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_34 (Length: 268)
Name: NF14356_low_34
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 33673444 - 33673190
Alignment:
| Q |
1 |
tttgatttcttgtcacatattcctcccaacaattcataaaaatttcaaccaattgaagcttgtgattattccaaaggcaaatgggtttgggacgaactta |
100 |
Q |
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| T |
33673444 |
tttgatttcttgtcacatattcctccaaacaattcacaaaaatttcaaccaattgaatcttgtgattattccaaaggcaaatgggtttgggacgaactta |
33673345 |
T |
|
| Q |
101 |
atattcaaataaattgtaccatgaaattgacannnnnnngatcctggatttcgatgccagcaaaacgaacagagaaaatatatatccacaaaagcatgat |
200 |
Q |
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| T |
33673344 |
atattcaaataaattgtgccatgaaactgacatttttttgatcctggattttgatgccagcaaaacgaacagag-aaatatatatccacaaaagcatgat |
33673246 |
T |
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| Q |
201 |
gtacgagaatggaatggacaagaatcaaagagacatacatgagcttcatctgtgtt |
256 |
Q |
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| T |
33673245 |
gtacgagaatggaatggacaagaatcaaagagacatacatgagcttcatttgtgtt |
33673190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 20303029 - 20303242
Alignment:
| Q |
1 |
tttgatttcttgtcacatattcctcccaacaattcataaaaatttcaaccaattgaagcttgtgattattccaaaggcaaatgggtttgggacgaa-ctt |
99 |
Q |
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| T |
20303029 |
tttgatttattgtcacgtatttctcccaacaaatcacaaaaatttcaaccaattaaaacttgtgattactccaaaggcaaatgggtt-gggacgaaactt |
20303127 |
T |
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| Q |
100 |
aatattcaaataaattgtaccatgaaa-ttgacannnnnnng-atcctggatttcgatgccagcaaaacgaacagagaaaatatatatccacaaaagcat |
197 |
Q |
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| T |
20303128 |
aatattcaaataaattttcccatgaaaattgtcctttattattatcctggattctgatgccagcaaaacaaatag-gacaatagatatccacaaaagtat |
20303226 |
T |
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| Q |
198 |
gatgtacgagaatgga |
213 |
Q |
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| T |
20303227 |
gatgtacaagaatgga |
20303242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 25704807 - 25704886
Alignment:
| Q |
48 |
accaattgaagcttgtgattattccaaaggcaaatgggtttgggacg-aacttaatattcaaataaattgtaccatgaaa |
126 |
Q |
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| T |
25704807 |
accaattgaagcatgtgatttttccaaaggtcaatgggtttgggacgaaacttattattcacataagttgtacgatgaaa |
25704886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 9711398 - 9711477
Alignment:
| Q |
48 |
accaattgaagcttgtgattattccaaaggcaaatgggtttgggacg-aacttaatattcaaataaattgtaccatgaaa |
126 |
Q |
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| T |
9711398 |
accaattgaagcatgtgatttttccaaaggtcaatgggtttgggacgaaacttattattcagataagttgtacgatgaaa |
9711477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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