View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_4 (Length: 549)
Name: NF14356_low_4
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Complemental strand, 42070896 - 42070380
Alignment:
| Q |
15 |
cataggaatcatttagatggtagtgtggaattgattggagttttactgtttggtccaacaaaaggttcttcagttctacaggccgtaagagcgactggcc |
114 |
Q |
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| T |
42070896 |
cataggaatcatttagatggtagtgtggaattgattggagttttactgtttggtccaacaaaaggttcttcagttctacaggccgtaagagcgactggcc |
42070797 |
T |
|
| Q |
115 |
tacctgttgttgatgattgggaatgcttaaaatcaagggtatacacaaaaacttatctctattgttattgttactttcgtagcacgacactttcacctga |
214 |
Q |
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| T |
42070796 |
tacctcttgttgatgattgggaatgcttaaaatcaagggtatacacaaaaacttatctctattgttattattacttttgtagcacgacactttcacctga |
42070697 |
T |
|
| Q |
215 |
aggcatgtctggtatccgacataatgtagatacattacattattctttttgataaattataatcagtgttgacgcgtcaatattagtcttgcgtctaata |
314 |
Q |
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| T |
42070696 |
aggcatgtctggtatccgacataatgtagatacattacattattctttttgataaattataatcagtgttgacgcgtcaatattagtcttgcgtctaata |
42070597 |
T |
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| Q |
315 |
tctgccttcataacttattaacaagtatataacatacaatggttgtaaattgttattaattaacatgttattgatttcaatttggttgtgtaggttcggt |
414 |
Q |
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| T |
42070596 |
tctgccttcataacttattaataagtatataacatacaatggttgtaaattgttattaattaacatgttattgatttcaatttggttgtgtaggttcggt |
42070497 |
T |
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| Q |
415 |
tgtttgaaactcattgtgggtcactgacccagtatgggatgaaacacatgcgagcatttgcaaacatttgcaacagtggtatttccgaggattctatgga |
514 |
Q |
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| T |
42070496 |
tgtttgaaactcattgtgggtcactgacccagtatgggatgaaacacatgcgagcatttgcaaacatttgcaacagtggtatttccgaggattctatgga |
42070397 |
T |
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| Q |
515 |
gaaggcatgtatggtag |
531 |
Q |
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| T |
42070396 |
gaaggcatgcatggtag |
42070380 |
T |
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