View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_41 (Length: 240)
Name: NF14356_low_41
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_41 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5963347 - 5963587
Alignment:
| Q |
1 |
ctataatgatattgattcctttgcactgcattagtctcttttatgaaaaaataattattttatgagctnnnnnnnttgaaattcag-ttattttagttaa |
99 |
Q |
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| T |
5963347 |
ctataatgatattgattcctttgcactgcattagtctcttttatgaaaaaataattattttatgagctaaaaaaattgaaattcagcttattttagttaa |
5963446 |
T |
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| Q |
100 |
tttctggttatgcaccattagttggaactgggaagactaaaatttgtttacttcatggatgtattgtctgatttttgcattaatttttgtgtgttcttta |
199 |
Q |
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| T |
5963447 |
tttctggttatgcaccattagttggaactgggaagactaaaatttgtttacttcatggatgtattgtctgatttttgcattaatttttgtgtgttcttta |
5963546 |
T |
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| Q |
200 |
tttgcagttcataacattgataatgaactggaggattcctc |
240 |
Q |
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| T |
5963547 |
tttgcagttcataacattgataatgaactggaggattcctc |
5963587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 5984674 - 5984729
Alignment:
| Q |
185 |
tttgtgtgttctttatttgcagttcataacattgataatgaactggaggattcctc |
240 |
Q |
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|||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
5984674 |
tttgtgtgctctttatttgcagttcatagcatagataatgaactggaggattcctc |
5984729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 5935144 - 5935190
Alignment:
| Q |
194 |
tctttatttgcagttcataacattgataatgaactggaggattcctc |
240 |
Q |
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| T |
5935144 |
tctttatttgcagttcacaacatagataatgaactggaggactcctc |
5935190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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