View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_44 (Length: 240)
Name: NF14356_low_44
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 33114957 - 33114831
Alignment:
| Q |
98 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccgacaccaagtccgacaaaaacacggc |
197 |
Q |
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| T |
33114957 |
cttacaagggcacctctcactttagcaggcgaagcttctgaaatgtacagtggagaagccattgaagccattccaacaccaagtccgacaaaaacacggc |
33114858 |
T |
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| Q |
198 |
ccacgatgagaatagcagggctggttg |
224 |
Q |
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| T |
33114857 |
ccacgatgagaatagcagggctggttg |
33114831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 33115465 - 33115382
Alignment:
| Q |
17 |
aatagttttcataccttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagactt |
100 |
Q |
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| T |
33115465 |
aatagttttcataccttagtgaaggccaagttgatgagataggagagaaattgtcccccagtgatgagaaaaccgttgagactt |
33115382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 189
Target Start/End: Original strand, 21493229 - 21493389
Alignment:
| Q |
29 |
accttagtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcg |
128 |
Q |
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| T |
21493229 |
accttagtaaaggccaagttgatgagataggaaaggaactgtccaccagtgatgagaaaactgttgagactaacaagagcacctctaactcgagttggtg |
21493328 |
T |
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| Q |
129 |
aagcttctgaaatgtacagtggagaagccattgaagccattccgacaccaagtccgacaaa |
189 |
Q |
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| T |
21493329 |
aagcctcagagatgtacaaaggagatgccattgaagccatcccgacaccaagaccaacaaa |
21493389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 21560409 - 21560587
Alignment:
| Q |
35 |
gtgaaggccaagttgatgagataggagaggaattgtcccccagtgatgagaaaactgttgagacttacaagggcacctctcactttagcaggcgaagctt |
134 |
Q |
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||||| ||||||||||| | |||||| ||||||||||| |||||||||||||| | |||||||| ||||| || ||||| || ||| || ||||||| |
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| T |
21560409 |
gtgaatgccaagttgataacataggaaaggaattgtccaccagtgatgagaaatccattgagactaacaagtgctcctctaaccctagttggtgaagctt |
21560508 |
T |
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| Q |
135 |
ctgaaatgtacagtggagaagccattgaagccattccgacaccaagtccgacaaaaacacggcccacgatgagaatagc |
213 |
Q |
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| T |
21560509 |
ctgagatatataaaggagaagccattgaagccattccaacaccaagaccaacaaagactctaccaacaatgagaatagc |
21560587 |
T |
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