View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_46 (Length: 239)

Name: NF14356_low_46
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_46
NF14356_low_46
[»] chr8 (4 HSPs)
chr8 (69-222)||(3068772-3068926)
chr8 (74-222)||(3305842-3305991)
chr8 (69-144)||(3069076-3069151)
chr8 (69-144)||(3305617-3305692)
[»] chr4 (13 HSPs)
chr4 (69-222)||(41315897-41316051)
chr4 (74-222)||(23254600-23254749)
chr4 (74-222)||(15874231-15874380)
chr4 (69-222)||(42305903-42306056)
chr4 (74-222)||(20878696-20878845)
chr4 (74-222)||(38484464-38484614)
chr4 (65-222)||(55893208-55893363)
chr4 (74-144)||(23254380-23254450)
chr4 (68-144)||(55893473-55893549)
chr4 (74-144)||(42306206-42306276)
chr4 (69-144)||(15874530-15874605)
chr4 (74-136)||(41316208-41316270)
chr4 (74-139)||(38485175-38485240)
[»] chr3 (11 HSPs)
chr3 (74-222)||(40560682-40560831)
chr3 (74-222)||(33794437-33794585)
chr3 (68-222)||(20124652-20124808)
chr3 (74-222)||(5048007-5048156)
chr3 (79-222)||(2439993-2440137)
chr3 (74-222)||(14783738-14783887)
chr3 (64-222)||(31724346-31724505)
chr3 (69-144)||(5048306-5048381)
chr3 (74-144)||(2439773-2439843)
chr3 (60-139)||(14784027-14784107)
chr3 (69-137)||(31724657-31724725)
[»] scaffold0291 (2 HSPs)
scaffold0291 (74-222)||(11278-11427)
scaffold0291 (69-222)||(10952-11106)
[»] chr5 (5 HSPs)
chr5 (74-222)||(31155565-31155714)
chr5 (74-219)||(31155896-31156042)
chr5 (74-219)||(39761540-39761686)
chr5 (74-144)||(39760427-39760497)
chr5 (74-144)||(31156195-31156265)
[»] chr1 (10 HSPs)
chr1 (74-222)||(7709925-7710074)
chr1 (69-222)||(34492452-34492606)
chr1 (74-222)||(52331630-52331779)
chr1 (74-222)||(37646880-37647029)
chr1 (74-209)||(13618337-13618473)
chr1 (74-190)||(13618539-13618656)
chr1 (69-144)||(52331405-52331480)
chr1 (74-144)||(7709703-7709773)
chr1 (69-137)||(13618254-13618322)
chr1 (74-136)||(34492240-34492302)
[»] chr2 (4 HSPs)
chr2 (69-222)||(12414060-12414214)
chr2 (69-222)||(12426120-12426274)
chr2 (69-218)||(4731910-4732060)
chr2 (74-144)||(4731718-4731788)
[»] scaffold0428 (2 HSPs)
scaffold0428 (74-222)||(7493-7642)
scaffold0428 (74-144)||(7777-7847)
[»] chr7 (10 HSPs)
chr7 (74-222)||(24825783-24825932)
chr7 (69-222)||(32793006-32793160)
chr7 (60-218)||(37873406-37873565)
chr7 (69-222)||(11324271-11324425)
chr7 (74-218)||(37879077-37879222)
chr7 (70-138)||(9402559-9402627)
chr7 (18-70)||(36440057-36440109)
chr7 (69-144)||(24825557-24825632)
chr7 (74-144)||(32792786-32792856)
chr7 (70-137)||(11324052-11324119)
[»] chr6 (13 HSPs)
chr6 (74-222)||(16766292-16766441)
chr6 (59-222)||(33746700-33746864)
chr6 (74-222)||(16368823-16368972)
chr6 (74-219)||(6851252-6851398)
chr6 (68-222)||(11242289-11242444)
chr6 (96-222)||(20582831-20582958)
chr6 (74-144)||(20582639-20582709)
chr6 (69-144)||(29846981-29847056)
chr6 (74-144)||(16766562-16766632)
chr6 (74-222)||(11246274-11246423)
chr6 (74-136)||(33746961-33747023)
chr6 (69-137)||(16368639-16368707)
chr6 (69-137)||(29846787-29846855)
[»] scaffold0184 (2 HSPs)
scaffold0184 (74-214)||(7183-7325)
scaffold0184 (69-144)||(7016-7091)
[»] scaffold0032 (2 HSPs)
scaffold0032 (110-224)||(32959-33076)
scaffold0032 (69-144)||(33218-33293)
[»] scaffold1408 (1 HSPs)
scaffold1408 (74-185)||(1747-1859)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 3068772 - 3068926
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||    
T  3068772 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 3068871  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  3068872 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 3068926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 3305991 - 3305842
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  |||||||||||||  ||||||||||||||||||| |||| ||||||| |||       ||||||||||    
T  3305991 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatctgtctttt 3305892  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  3305891 aaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 3305842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 3069151 - 3069076
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3069151 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 3069076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 3305617 - 3305692
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||| ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3305617 aaggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 3305692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 41315897 - 41316051
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||    
T  41315897 aaggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 41315996  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41315997 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 41316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 23254749 - 23254600
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  23254749 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 23254650  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  23254649 aaaaatactcctgggctcatttaagtcatgacaagtcaccaaaataccta 23254600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 15874231 - 15874380
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | ||||||||    
T  15874231 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtctttt 15874330  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||| |||||||| |||||||| |||||||||||||||    
T  15874331 aaaaatacccctgggcgcatttaaggcatgacaagtcaccaaaatgccta 15874380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 42305903 - 42306056
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  ||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||| |||       |||||    
T  42305903 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 42306002  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  42306003 cttttaaaaatacccct-gtcccatttaagtcatgacaagtcaccaaaatgccta 42306056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 20878696 - 20878845
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||| ||| ||||| |||||  |||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||       ||| ||||||    
T  20878696 ttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctatctttt 20878795  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20878796 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 20878845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 38484464 - 38484614
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgc-nnnnnnntctgtcttt 171  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| | ||        |||||||||    
T  38484464 ttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctttgcaaaaaaaatctgtcttt 38484563  T
Q  172 taaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  38484564 taaaaatatccctgggtccatttaagtcatgacaagtcaccaaaatgccta 38484614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 55893208 - 55893363
Alignment:
Q  65 tttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaatcagtcctcgcnnnnnnntc 164  Q
    |||| ||| ||||||||||||| |||| ||  |||||||  ||||||||||||||||  |||||||||||||||||||||  | ||| |||       ||    
T  55893208 tttgtaggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaa--attccccgcaaaaaaatc 55893305  T
Q  165 tgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  55893306 tgtcttttaaaaatagccctgggctcatttaagtcatgacaagtcaccaaaatgccta 55893363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 23254380 - 23254450
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  23254380 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaa 23254450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 55893549 - 55893473
Alignment:
Q  68 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    ||||| ||||||||||||||||||||| ||||||||   |||||||||||||||||||| |||||||||||||||||    
T  55893549 gaaggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaa 55893473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 42306276 - 42306206
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||| ||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  42306276 ttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 42306206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 15874605 - 15874530
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||| ||||||||||||||||  |||||||  ||||||||||||||||| |||||||||||||||||||||    
T  15874605 aaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaa 15874530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 41316270 - 41316208
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 136  Q
    |||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||||    
T  41316270 ttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaataaaa 41316208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 38485240 - 38485175
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaatt 139  Q
    |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||||||| |||||||    
T  38485240 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 40560831 - 40560682
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  40560831 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 40560732  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  40560731 aaaaatacccctgggcccatttaagtcatgacaaatcactaaaataccta 40560682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 33794437 - 33794585
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       ||||||||||    
T  33794437 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaatctgtctttt 33794535  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33794536 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33794585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 20124652 - 20124808
Alignment:
Q  68 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctg 166  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |||       | ||    
T  20124652 gaaggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatg 20124751  T
Q  167 tcttttaaaaatacccct-gggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  20124752 tcttttaaaaatacccctggggcccatttaagtaatgacaagtcaccaaaatgccta 20124808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 5048007 - 5048156
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||       ||| ||||||    
T  5048007 ttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcgaaaaaatctatctttt 5048106  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  5048107 aaaaatacccctgggtccatttaagtaatgacaagtcaccaaaatgccta 5048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 222
Target Start/End: Complemental strand, 2440137 - 2439993
Alignment:
Q  79 tattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtcttttaaaaa 177  Q
    |||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||       |||||||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtcttttaaaaa 2440038  T
Q  178 tacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||| |||||||||| ||||||| |||||||||||||||    
T  2440037 tacccctgggtccatttaagtaatgacaagtcaccaaaatgccta 2439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 14783738 - 14783887
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||| ||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | |||| |||    
T  14783738 ttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtcgttt 14783837  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  14783838 aaaaatgcccctgggcccatttaagtcatgacaagtcaccaaaatgccta 14783887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 31724346 - 31724505
Alignment:
Q  64 ttttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnn 162  Q
    |||| |||| ||||||||||||||||||| |  |||||||  |||||||| |||||||||||||||||||||||||||| ||||||||| |||           
T  31724346 tttttaaggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaa 31724445  T
Q  163 tctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    | |||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  31724446 tttgtcttttaaaaatacccttggacccatttaagtcatgacaagtcaccaaaatgccta 31724505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 5048381 - 5048306
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||    
T  5048381 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaa 5048306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 2439773 - 2439843
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||| |||||||||||||||||||    
T  2439773 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaa 2439843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 14784107 - 14784027
Alignment:
Q  60 aatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgt-aaaataaaaatt 139  Q
    ||||||||  ||| |||||||||||||||||||||  |||||||| ||||||||||||| |||| ||| ||||||||||||    
T  14784107 aatattttctaggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaataaaaatt 14784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 31724725 - 31724657
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 137  Q
    |||| ||||||||||||||||||| |  |||||||  ||||||||||||| ||||  ||||| ||||||    
T  31724725 aaggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcccggtaaattaaaaa 31724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 11427 - 11278
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||||    
T  11427 ttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgtctttt 11328  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  11327 aaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgccta 11278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 10952 - 11106
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  |||||||  |||||||| |||||||||||||||||||||||||||| |||||||||||||       |||||    
T  10952 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgt 11051  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||| || ||||||| ||| |||||||||||    
T  11052 cttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgccta 11106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 31155714 - 31155565
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||       | ||||||||    
T  31155714 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtctttt 31155615  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  31155614 aaaaatacccttgggcccatttaagtcatgacaagtcaccaaaatgccta 31155565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 31155896 - 31156042
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||||||||  |||||||||  ||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||       | ||||||||    
T  31155896 ttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatatgtctttt 31155995  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 219  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  31155996 aaaaatacccctgggcccatttaagttatgacaagtcaccaaaatgc 31156042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 219
Target Start/End: Complemental strand, 39761686 - 39761540
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||| ||||||  |||||||   |||||||||||||||||||||||||||||||||||||| |||||||  ||       ||| ||||||    
T  39761686 ttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctatctttt 39761587  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39761586 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgc 39761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 39760427 - 39760497
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39760427 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaa 39760497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 31156265 - 31156195
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  31156265 ttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaa 31156195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 7710074 - 7709925
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||       ||||||||||    
T  7710074 ttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtccttgcaaaaaaatctgtctttt 7709975  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  7709974 aaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 7709925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 34492606 - 34492452
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcaga-atcagtcctcgcnnnnnnntctgt 167  Q
    |||| ||||||||||||||||| |||  ||||||| || |||||||||||||||||||||||||||||||||||| |||||| | |||       ||| |    
T  34492606 aaggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgcaaaaaaatctat 34492507  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34492506 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 34492452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 52331779 - 52331630
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  |||||||||||||| ||||||||||||||||||| |||| ||||||| |||       | | ||||||    
T  52331779 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatttatctttt 52331680  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  52331679 aaaaatacccctgggcccatttaagtcatgacaagtcatcaaaatgccta 52331630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 37647029 - 37646880
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||| ||||  ||  |||||||   ||||||||||||||||||||||||||||||||||| || |||||||  ||       ||||||||||    
T  37647029 ttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtccgtgcaaaaaaatctgtctttt 37646930  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37646929 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 37646880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 13618473 - 13618337
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||| ||||||||  |||||||  |||||||||||||||||||||||||||||||| |||||| ||| |||  ||       ||||||||||    
T  13618473 ttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctttt 13618374  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatc 209  Q
    |||||||||||||||||||||||||||||||||||||    
T  13618373 aaaaatacccctgggcccatttaagtcatgacaaatc 13618337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 13618656 - 13618539
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||  ||       ||||||||||    
T  13618656 ttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctttt 13618557  T
Q  173 aaaaatacccctgggccc 190  Q
    ||||||||||||||||||    
T  13618556 aaaaatacccctgggccc 13618539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 52331405 - 52331480
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||||||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  52331405 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 52331480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 7709703 - 7709773
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||| ||||||||||  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  7709703 ttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 7709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 13618254 - 13618322
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 137  Q
    |||| ||||||||||||||| |||||  |||||||| ||||||||||||| |||| ||||||| |||||    
T  13618254 aaggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtccctgtaaaaaaaaaa 13618322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 34492240 - 34492302
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 136  Q
    |||||||||||||||||||||  |||||||  ||||||||||||| |||| ||||||| ||||    
T  34492240 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccgtgtaaaaaaaaa 34492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 12414214 - 12414060
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| |||       |||||    
T  12414214 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 12414115  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12414114 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 12414060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 12426274 - 12426120
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  ||||||| ||||||||||||||  |||||||||||||||||||||||| ||||||| |||       |||||    
T  12426274 aaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 12426175  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12426174 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 12426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 218
Target Start/End: Complemental strand, 4732060 - 4731910
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgt 167  Q
    |||| ||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||       | |||    
T  4732060 aaggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgt 4731961  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 218  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  4731960 cttttaaaaatatccctgggcccatttaagtcatgacaagtcaccaaaatg 4731910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 4731718 - 4731788
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||||||||||||||||    
T  4731718 ttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaa 4731788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 7493 - 7642
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| |||||||||||||||||| ||| ||| |||       ||||||||||    
T  7493 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatctgtctttt 7592  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7593 aaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 7847 - 7777
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||    
T  7847 ttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaa 7777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 24825932 - 24825783
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||| |||       ||||||||||    
T  24825932 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 24825833  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  24825832 aaaaatacccctgggcccatttaagtcataacaagtcaccaaaatgccta 24825783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 32793160 - 32793006
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||||||||||||  ||||||   ||||||||||||||||||||||||||||||||||||||| |||||||  ||       |||||    
T  32793160 aaggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctgt 32793061  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  32793060 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 32793006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 60 - 218
Target Start/End: Original strand, 37873406 - 37873565
Alignment:
Q  60 aatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnn 158  Q
    ||||| || |||| |||||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||  ||       
T  37873406 aatatattaaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaa 37873505  T
Q  159 nnnntctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 218  Q
        |||||||||||||||||||||||||||||||||| | ||||||  |||||||||||    
T  37873506 aaattctgtcttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37873565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 11324425 - 11324271
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgt 167  Q
    |||| |||||||||||| ||||||||  |||||||   |||||||||||||||||||||||||||||||||||||| ||| ||  |||       |||||    
T  11324425 aaggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcaatctccgcaaaaaaatctgt 11324326  T
Q  168 cttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  11324325 cttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgccta 11324271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 37879222 - 37879077
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||| ||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||  ||       ||||||||||    
T  37879222 ttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccctgcaaaaaattctgtctttt 37879123  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatg 218  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||    
T  37879122 aaaaatacccctgggcccatttaattgatgacaggtcaccaaaatg 37879077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 9402559 - 9402627
Alignment:
Q  70 aggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaat 138  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  9402559 aggtttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 36440057 - 36440109
Alignment:
Q  18 aacactaagcaagcatgaaatggacaaatggagtggtgctttaatattttgaa 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36440057 aacactaagcaagcatgaaatggacaaatggagtggtgctttaatattttgaa 36440109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 24825557 - 24825632
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||    
T  24825557 aaggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaa 24825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 32792786 - 32792856
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    ||||||||||||||||||| |  |||||||  |||||||||||||||||||||||||||||||||||||||    
T  32792786 ttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaa 32792856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 11324052 - 11324119
Alignment:
Q  70 aggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 137  Q
    |||||||||||||||||||||||||  |||||||  ||| ||||||||| |||| ||||||| |||||    
T  11324052 aggtttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtccctgtaaaaaaaaaa 11324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 16766292 - 16766441
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||| || |||||||||||||| ||||||||||||||||||| ||||||||| |||       ||||||||||    
T  16766292 ttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 16766391  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||||||    
T  16766392 aaaaatacccttgggcccatttaagtcatggcaagtcaccaaaatgccta 16766441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 33746700 - 33746864
Alignment:
Q  59 taatattttgaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnn 157  Q
    ||||| ||| |||| |||||||||||||||||||||  |||||||  ||||||||||||| |||| |||||||||||||||||||| ||| |||  ||      
T  33746700 taataatttcaaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccctgcaa 33746799  T
Q  158 nnnnntctgtcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33746800 aaaaatctgtcttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33746864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 16368972 - 16368823
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||   |       | ||||||||    
T  16368972 ttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccctacaaaaaaatttgtctttt 16368873  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  16368872 aaaaatacccctgggcccatttaaatcatgacaagtcaccaaaatgccta 16368823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 6851252 - 6851398
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | |        |||||||||    
T  6851252 ttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagttcccacaaaaaaaactgtctttt 6851351  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgc 219  Q
    ||||||||||||||  |||||||||||||||||| ||||||||||||    
T  6851352 aaaaatacccctggatccatttaagtcatgacaagtcaccaaaatgc 6851398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 222
Target Start/End: Original strand, 11242289 - 11242444
Alignment:
Q  68 gaaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctg 166  Q
    ||||| |||||||||||||||||||| |||||||||   | ||||||||||| |||||||||||||||||||||| ||||||||| |||       ||||    
T  11242289 gaaggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctg 11242388  T
Q  167 tcttttaaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||||| | ||| ||||||||||||||||||  | |||||||||||||    
T  11242389 tcttttaaaaatactcatggacccatttaagtcatgacaggtgaccaaaatgccta 11242444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 222
Target Start/End: Complemental strand, 20582958 - 20582831
Alignment:
Q  96 taaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnntctgtcttttaaaaatacccctgggcccattt 194  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||| |||| || |||       ||||||||||||||||| ||||||||||||||    
T  20582958 taaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgcaaaaaaatctgtcttttaaaaatatccctgggcccattt 20582859  T
Q  195 aagtcatgacaaatcaccaaaatgccta 222  Q
    |||||||||||| ||| |||||||||||    
T  20582858 aagtcatgacaagtcatcaaaatgccta 20582831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 144
Target Start/End: Original strand, 20582639 - 20582709
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||    
T  20582639 ttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaa 20582709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 29847056 - 29846981
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| |||||||||||||||||||||  |||||||  |||||||||||||||||  ||||||||||||||||||||    
T  29847056 aaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaa 29846981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 16766632 - 16766562
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||||||||||| ||||||||  |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  16766632 ttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaa 16766562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 11246423 - 11246274
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattca-gaatcagtcctcgcnnnnnnntctgtctttt 172  Q
    ||||||||||||||| |||||  |||||||||| ||||||||||  ||||||||||||||||||||||  ||||||||| | |       | ||||||||    
T  11246423 ttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtccccacaaaaaaatttgtctttt 11246324  T
Q  173 aaaaatacccctgggcccatttaagtcatgacaaatcaccaaaatgccta 222  Q
    | |||||||||| |  | ||||||||||||| |  | |||||||||||||    
T  11246323 ataaatacccctagatctatttaagtcatgaaaggttaccaaaatgccta 11246274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 33747023 - 33746961
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaa 136  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||| |||||||||||| ||||    
T  33747023 ttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 16368639 - 16368707
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 137  Q
    |||| |||||||||||||||||||||  |||||||    ||||||||||| |||| ||||||| |||||    
T  16368639 aaggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtccctgtaaaaaaaaaa 16368707  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 29846787 - 29846855
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaa 137  Q
    |||| |||||||||||||||||||||  |||||||   | |||||||||| |||| ||||||| |||||    
T  29846787 aaggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtccctgtaaaaaaaaaa 29846855  T

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Target: scaffold0184 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 214
Target Start/End: Complemental strand, 7325 - 7183
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtc-ttt 171  Q
    |||||||||| | ||||||||  |||||||  ||||||||||||||||||||||||||||||||||||| ||||||||| |||       |||||| |||    
T  7325 ttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtctttt 7226  T
Q  172 taaaaatacccctgggcccatttaagtcatgacaaatcaccaa 214  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  7225 taaaaatacccctgggcccatttaagtcatgacaagtcaccaa 7183  T

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Target: scaffold0184; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 7016 - 7091
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    |||| ||||||||||||||||| |||  ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  7016 aaggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaa 7091  T

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Target: scaffold0032 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 110 - 224
Target Start/End: Original strand, 32959 - 33076
Alignment:
Q  110 ttaagttttggtccttgtaaaataaaaattcagaa-tcagtcctcgcnnnnnnn--tctgtcttttaaaaatacccctgggcccatttaagtcatgacaa 206  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||         |||||||||||||||||||||||| ||||| |||||||||||||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaaaatctgtcttttaaaaatacccctggacccatataagtcatgacaa 33058  T
Q  207 atcaccaaaatgcctatg 224  Q
     |||||||||||||||||    
T  33059 gtcaccaaaatgcctatg 33076  T

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Target: scaffold0032; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 33293 - 33218
Alignment:
Q  69 aaggtttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcagaa 144  Q
    ||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||||||||||||||||    
T  33293 aaggtttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaa 33218  T

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Target: scaffold1408 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 185
Target Start/End: Original strand, 1747 - 1859
Alignment:
Q  74 ttaaatattgcactcgtccctataaatatgatccgtttaagttttggtccttgtaaaataaaaattcag-aatcagtcctcgcnnnnnnntctgtctttt 172  Q
    |||||||||||||||||||||  |||||||  |||||||||||||||||||| |||||||||||||||| ||||| ||| |||       ||||||||||    
T  1747 ttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatctgtctttt 1846  T
Q  173 aaaaatacccctg 185  Q
    |||||||||||||    
T  1847 aaaaatacccctg 1859  T

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