View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14356_low_47 (Length: 239)
Name: NF14356_low_47
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_47 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 28224616 - 28224833
Alignment:
| Q |
5 |
ataatatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaata |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28224616 |
ataaaatagccaaaatatttaacataattaatactgtacactcacggcagaaaaacatactcaatgacataaacatattttcattattagattcagaata |
28224715 |
T |
|
| Q |
105 |
aataagagagattagaaaccattcaatttcaaatcaatgacaagtgtctaaatagttaacgaaaactttcaaataacctggacacagactgataatagga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28224716 |
aataagagagattagaaaccattcaatttcaaatcaatgagaagtgtccaaatagttaacgaaaactttcaaataacctggacatagactgataatagga |
28224815 |
T |
|
| Q |
205 |
tatctcttcatctaaaag |
222 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
28224816 |
tatcttttcatctaaaag |
28224833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University