View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14356_low_5 (Length: 548)
Name: NF14356_low_5
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 7639479 - 7639980
Alignment:
| Q |
17 |
cttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagactcctaatctgaaag |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639479 |
cttccttcatttcaaaatttgacacttctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagactcctaatctgaaag |
7639578 |
T |
|
| Q |
117 |
ctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatgttttgaggttaagaaatacta--atattacttatgtcc |
214 |
Q |
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||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7639579 |
ctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgtaccatgttttgaggttaagaaatactataatattacttatgtcc |
7639678 |
T |
|
| Q |
215 |
attgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgccttgctgtttcaaata |
314 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639679 |
attgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatcttgaagacgactggccattactttcagtgccttgctgtttcaaata |
7639778 |
T |
|
| Q |
315 |
ttctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639779 |
ttctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatc |
7639878 |
T |
|
| Q |
415 |
cggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtaga |
514 |
Q |
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| T |
7639879 |
cggatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtaga |
7639978 |
T |
|
| Q |
515 |
ca |
516 |
Q |
| |
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|| |
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|
| T |
7639979 |
ca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 516
Target Start/End: Original strand, 7632783 - 7633263
Alignment:
| Q |
17 |
cttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaagtagtaatggacattctcctaaagactcctaatctgaaag |
116 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| |
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| T |
7632783 |
cttccttcatttcaaaatttgacacatctgcttctgaggactaacactttcactagtgaagtagtaacgggcattcttctaaagactcctaatctgaaag |
7632882 |
T |
|
| Q |
117 |
ctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatgttttgaggttaagaaatactaatattacttatgtccat |
216 |
Q |
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| T |
7632883 |
ctcttcatattcatacggtacatcttcaatcatgcttaacctctattata-tatgaaccatgtttcaaggat----------------actcatgtccat |
7632965 |
T |
|
| Q |
217 |
tgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgccttgctgtttcaaatatt |
316 |
Q |
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|||||||||||| |||||||||| ||||| ||| || ||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||| |
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| T |
7632966 |
tgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacgactggacattactttcagtgccttactgtttcgaatatt |
7633063 |
T |
|
| Q |
317 |
ctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccg |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
7633064 |
ctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaagtttgttttaaaaaatgccagagttttagaagagatccg |
7633163 |
T |
|
| Q |
417 |
gatagtgtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
516 |
Q |
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||||||||||||||| || ||| |||| ||| |||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |
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| T |
7633164 |
gatagtgtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagctgtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 31268050 - 31267996
Alignment:
| Q |
67 |
cactagtgaagtagtaatggacattctcctaaagactcctaatctgaaagctctt |
121 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| |
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| T |
31268050 |
cactagtgaagtactaatggacattctccgaaagactcctaaactggaagttctt |
31267996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
291 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
351 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 323
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
291 |
ttcagtgccttgctgtttcaaatattctctcaa |
323 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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