View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14356_low_50 (Length: 222)
Name: NF14356_low_50
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14356_low_50 |
 | |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38120766 - 38120545
Alignment:
| Q |
1 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38120766 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttacactgttgtccatctaatgtagctaattcacacggttccttagttctttttagt |
38120667 |
T |
|
| Q |
101 |
ttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaactactctatgttgcttaaatagttcttcaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38120666 |
ttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatccaactacactatgttgcttaaatagttcttcaata |
38120567 |
T |
|
| Q |
201 |
aaacaatttgtggatttagtct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38120566 |
aaacaatttgtggatttagtct |
38120545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38609354 - 38609400
Alignment:
| Q |
1 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609354 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38609400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38794137 - 38794183
Alignment:
| Q |
1 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
47 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38794137 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttac |
38794183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 34593022 - 34593078
Alignment:
| Q |
100 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcac |
156 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
34593022 |
tttgtgctgcacttctttatctgttgaagtcaaactttgaatttgtagttaattcac |
34593078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 38609476 - 38609533
Alignment:
| Q |
100 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
157 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
38609476 |
tttgtgctgcgcttctttctccattgaagtgaaactttgaatttgtagttaattcaca |
38609533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 38794259 - 38794316
Alignment:
| Q |
100 |
tttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcaca |
157 |
Q |
| |
|
|||||||||| ||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
38794259 |
tttgtgctgcgcttctttctccgttgaagtgaaactttgaatttgtagttaattcaca |
38794316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 28730343 - 28730149
Alignment:
| Q |
1 |
tctctgctgaagtgaatctctatgaaatttgtagttaataagtttacgctgttgtccatctaatgtagctaattcacacggttgcttagttctttttagt |
100 |
Q |
| |
|
||||||||||||| || || ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28730343 |
tctctgctgaagtaaaactatatgaaatttgtagttaataagtttacaccgttgttcatctaatgtagctaattcacaccgttgcttagttctttttagt |
28730244 |
T |
|
| Q |
101 |
ttgtgctgcacttctttgtctcatgaagtgaaactttgaatttgtagttaattcacactattatcc--aactactctatgttgcttaaatagttc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
28730243 |
ttgtgctgcacttctttgtctcatgaagtgaaactctgaatttgtagttaattcacactattatccatatatactctatgttgcttaactagttc |
28730149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 33078556 - 33078588
Alignment:
| Q |
23 |
tgaaatttgtagttaataagtttacgctgttgt |
55 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
33078556 |
tgaaatttgtagttaataagtttacactgttgt |
33078588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 3928143 - 3928106
Alignment:
| Q |
81 |
gttgcttagttctttttagtttgtgctgcacttctttg |
118 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3928143 |
gttgcttagatctttttagtttgtgcagcacttctttg |
3928106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University