View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14356_low_53 (Length: 210)

Name: NF14356_low_53
Description: NF14356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14356_low_53
NF14356_low_53
[»] chr2 (14 HSPs)
chr2 (9-167)||(30024242-30024400)
chr2 (9-167)||(30036297-30036455)
chr2 (9-167)||(30117722-30117880)
chr2 (9-167)||(30230435-30230593)
chr2 (9-167)||(30132479-30132637)
chr2 (9-167)||(30069317-30069475)
chr2 (19-167)||(30791389-30791537)
chr2 (21-167)||(30173148-30173294)
chr2 (19-165)||(30253227-30253373)
chr2 (27-146)||(30182905-30183024)
chr2 (21-146)||(30160742-30160867)
chr2 (59-146)||(30031253-30031340)
chr2 (59-146)||(30225391-30225478)
chr2 (27-146)||(30280705-30280824)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 2e-63; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 30024242 - 30024400
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30024242 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30024341  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30024342 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30024400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30036455 - 30036297
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30036455 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30036356  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30036355 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30117880 - 30117722
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30117880 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30117781  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30117780 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30117722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30230593 - 30230435
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30230593 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30230494  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  30230493 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacataccttgg 30230435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 9 - 167
Target Start/End: Complemental strand, 30132637 - 30132479
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  30132637 tccaagaaatttatattgaagaatgtggcatagagtttattgcagcacatgatgaattggctgacacatatccgatacttattttcccagaattaacatc 30132538  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||||||| || |||||||    
T  30132537 tttgagttttcgagatttgtcacaacttagaagcttctctcatggattacanaccttgg 30132479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 30069317 - 30069475
Alignment:
Q  9 tccaagaaaattatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatc 108  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||| |||||| |||   ||| || ||||||| ||||||||||||||||||||||    
T  30069317 tccaagaaatttatattgaagaatgtggcatggagattattgtagcacaagatgaattggtcaacagatttccaatatttattttcccagaattaacatc 30069416  T
Q  109 tttgagtttccgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||||||||||| ||||||||||||||||||||||||||   ||||||| ||||||||||    
T  30069417 tttgagtttccaagatttgacacaacttcgaagcttctacaatggattacataccttgg 30069475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 30791389 - 30791537
Alignment:
Q  19 ttatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttc 118  Q
    |||||| |||||||||||| |||| ||||||| ||||||||||||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||    
T  30791389 ttatatagaagaatgtggcgtagaaattattgtagcacatgatgaaatggttgacagagttccaatacttattttcccagaattaacttctttgagtttc 30791488  T
Q  119 cgagatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    | |||||||||| |||||||||||||||   ||||||| ||||||||||    
T  30791489 caagatttgacagaacttcgaagcttctactatggatttcataccttgg 30791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 21 - 167
Target Start/End: Original strand, 30173148 - 30173294
Alignment:
Q  21 atattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccg 120  Q
    |||| ||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||  |||||||| ||| ||||||||||| ||  |||  |    
T  30173148 atatagaagaatgtggcatagagattattgtagcacaggatgaaatggctgacacaaatccaaagcttatttttccaaaattaacatctctgtctttaag 30173247  T
Q  121 agatttgacacaacttcgaagcttctctcatggattgcataccttgg 167  Q
    ||| |||||||||||||||||||||| ||||| ||  ||||||||||    
T  30173248 agaattgacacaacttcgaagcttctatcatgcatcacataccttgg 30173294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 30253227 - 30253373
Alignment:
Q  19 ttatattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttc 118  Q
    |||||| ||| ||||||||||||||||||| | |||||| ||||||| || ||||||   |||| |||||| |||||||||||||||||||||||||||     
T  30253227 ttatatagaaaaatgtggcatagagattatagtagcacaagatgaaacggctgacactgttccagtacttaatttcccagaattaacatctttgagtttt 30253326  T
Q  119 cgagatttgacacaacttcgaagcttctctcatggattgcatacctt 165  Q
    || |||||||||||||||||||| ||||  | |||||| ||||||||    
T  30253327 cgtgatttgacacaacttcgaagattctaccttggattacatacctt 30253373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 30183024 - 30182905
Alignment:
Q  27 aagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagattt 126  Q
    ||||||||||| | |||||||||| || ||| |||||||||  |||||||  ||||||||||| ||||||||||||||||| ||||||||| ||||||||    
T  30183024 aagaatgtggcgttgagattattgtagaacaagatgaaatgtctgacacagttccaatacttaatttcccagaattaacatttttgagttttcgagattt 30182925  T
Q  127 gacacaacttcgaagcttct 146  Q
    || |||||||| ||||||||    
T  30182924 gaaacaacttcaaagcttct 30182905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 30160742 - 30160867
Alignment:
Q  21 atattgaagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccg 120  Q
    |||| ||| |||||||| ||||||||||||  || ||||||||||| | |||||||  ||||||  ||||||||||| ||||||| ||| |  |||| ||    
T  30160742 atatagaaaaatgtggcgtagagattattgtggctcatgatgaaatagctgacacaattccaatttttattttcccaaaattaacgtctctatgttttcg 30160841  T
Q  121 agatttgacacaacttcgaagcttct 146  Q
    ||| ||| ||||||||||||||||||    
T  30160842 agaattgtcacaacttcgaagcttct 30160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 30031253 - 30031340
Alignment:
Q  59 gatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagatttgacacaacttcgaagcttct 146  Q
    |||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||| |||||  |||  | |||||| |||||||||    
T  30031253 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagtctccgaagtttagctcaacttagaagcttct 30031340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 30225391 - 30225478
Alignment:
Q  59 gatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagatttgacacaacttcgaagcttct 146  Q
    |||||||||| |||||||  |||||||||| |||||||| ||||||||||||||||| |||||  |||  | |||||| |||||||||    
T  30225391 gatgaaatggctgacacagttccaatacttgttttcccaaaattaacatctttgagtctccgaagtttagctcaacttagaagcttct 30225478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 30280705 - 30280824
Alignment:
Q  27 aagaatgtggcatagagattattgcagcacatgatgaaatggatgacacatatccaatacttattttcccagaattaacatctttgagtttccgagattt 126  Q
    ||||||||||| ||||||||||||  || ||||||||||| |  ||||||  ||||||  ||||||||||| || |||| ||| |  |||| ||||| ||    
T  30280705 aagaatgtggcgtagagattattgtggctcatgatgaaatagcagacacaattccaatgtttattttcccaaaactaacgtctctatgttttcgagagtt 30280804  T
Q  127 gacacaacttcgaagcttct 146  Q
    | ||||||||||||||||||    
T  30280805 gccacaacttcgaagcttct 30280824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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