View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14357_low_2 (Length: 562)
Name: NF14357_low_2
Description: NF14357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14357_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 4741603 - 4742135
Alignment:
| Q |
16 |
atggatagttacttcattgttgattattggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaa |
115 |
Q |
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| T |
4741603 |
atggatagttacttcattgttgattattggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaa |
4741702 |
T |
|
| Q |
116 |
ccacagacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtgatcatcaaaacta---tttctaggtaacttaatacccaattaaacta |
212 |
Q |
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| T |
4741703 |
ccacagacctcaaaaacttgttgaagtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaa--ttattcccaattaaacca |
4741800 |
T |
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| Q |
213 |
acaaattattgggaaacttgtcacatcatcaaaagacttgttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggttt----- |
307 |
Q |
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| T |
4741801 |
acaaatcagtgggaaacttgtcacatcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaat |
4741900 |
T |
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| Q |
308 |
---------ggaaaattcaaatgtttacatcactttc------------actatctatggtccatgggactggaaaactgaagtgcttccgaacaagttc |
386 |
Q |
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| T |
4741901 |
tcaaaattaggaaaattcaaatgtttacatcactttcactttcaattttactatctatggtccatgggattggaaaactgaagtgcttccgaacaagttc |
4742000 |
T |
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| Q |
387 |
agtgtctatatggaggaggctgcatgcaaatagctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctcttttt |
486 |
Q |
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| T |
4742001 |
atcgtctgtatggag-----------------gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaaatagtctttctcttatt |
4742083 |
T |
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| Q |
487 |
aatttattggcaaatcgcaatggtatacaatcacattttcatgtagattcag |
538 |
Q |
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| T |
4742084 |
aatttattggcaaatcgcaatggtatacaatcacattttcatgtagattcag |
4742135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 4742666 - 4742854
Alignment:
| Q |
12 |
gaatatggatagttacttcattgttgatt---------attggttcatgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtt |
102 |
Q |
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| T |
4742666 |
gaatatggatagttacttcattgttgaatgttgatctcattggttcatgtgagtggaaacagaatatattgcaaagcaaa-caaaggtcccacttaggtt |
4742764 |
T |
|
| Q |
103 |
tagatcgaaaaaaccacagacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
190 |
Q |
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| T |
4742765 |
tggatcgaaaaatccatagacctcaagaacatgttgaagtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 402
Target Start/End: Original strand, 4721118 - 4721188
Alignment:
| Q |
332 |
tttcactatctatggtccatgggactggaaaactgaagtgcttccgaacaagttcagtgtctatatggagg |
402 |
Q |
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| T |
4721118 |
tttcactatgtatggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggagg |
4721188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 4722271 - 4722374
Alignment:
| Q |
16 |
atggatagttacttcattgttgattattggttca-tgtaagtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaa |
114 |
Q |
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| T |
4722271 |
atggatagttacttcattgttaatt---ggttcaatgt--gtagaaacagaatat--tgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaa |
4722363 |
T |
|
| Q |
115 |
accacagacct |
125 |
Q |
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| T |
4722364 |
accacagacct |
4722374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 4726331 - 4726469
Alignment:
| Q |
54 |
agtggaaacagaatatattgcaaagcaaaacaaaggtcccacttaggtttagatcgaaaaaaccacagacctcaagaacatgttgaagtagaaagttaga |
153 |
Q |
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| T |
4726331 |
agtggaaacggaatatattgtaaaacaaaaaaaaggtctcactcatatttggatccaaaaaaccatagaccttgagaacatgtctaagtagaaagttgga |
4726430 |
T |
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| Q |
154 |
aactgttcatttgtgatcatcaaaactatttctaggtaa |
192 |
Q |
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| T |
4726431 |
gattgttcggttgtcatcaacaaaactacttccaggtaa |
4726469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 4721031 - 4721071
Alignment:
| Q |
271 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaa |
311 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaa |
4721071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 4721188 - 4721238
Alignment:
| Q |
419 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
469 |
Q |
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| T |
4721188 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 4721403 - 4721453
Alignment:
| Q |
419 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
469 |
Q |
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| T |
4721403 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 4721618 - 4721668
Alignment:
| Q |
419 |
gctaccaaatcattctgttatcaataaatcacaaaaacctaaggaatcaaa |
469 |
Q |
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| T |
4721618 |
gctaccaaatcattctgttatcaataaatcacaaaagcctaatgaaacaaa |
4721668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
162 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
233 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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