View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14357_low_4 (Length: 496)
Name: NF14357_low_4
Description: NF14357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14357_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 2694744 - 2695182
Alignment:
| Q |
18 |
taacttgtgtcaaatgatacataagtgtcaagaagttggtttagggtcttaaatatcagattacctactccaaaaagaagtcttgtgaaaagggggatgg |
117 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694744 |
taacttgtgtcaaatgataaa--agtgtcaagaagttggtttagggtcttaaatatcagattacctactccaaaaagaagtcttgtgaaaagggggatgg |
2694841 |
T |
|
| Q |
118 |
gacgcctcatggaaaatgtgagcaattggtatcataccttcaaaagcca------------ctagaccatgtaaacaatcacctgctttttatgtctcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2694842 |
gacgcctcatggaaaatgtgagcaattggtatcataccttcaaaagcaatcgcagccacacctagaccatgtaaacaatcacctgctttttatgtctcat |
2694941 |
T |
|
| Q |
206 |
ggcaatagacaacaatgtcaaattgcacaaaa--gcattggtcagtgcaaaaggaatacagcatcatcatatgacacttgagttcattaactgcttttta |
303 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2694942 |
ggcaacagacaacaatgtcaaattgaacaaaattgcattggtcagtgcaaaaggaatacagcatcatcatatgacacttgagttcattaacttcttttta |
2695041 |
T |
|
| Q |
304 |
tggctcaccaaagtttctgaattccctttaataattggaattataatatatgtctctctaatattttcttttgagataaaagttcagccaggttatgcca |
403 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2695042 |
tggctcaccaaagtttctgaattcccattaataattggaattataatatatgtctctctcatattttcttttgagat-aaagttcagccaggttatgcca |
2695140 |
T |
|
| Q |
404 |
atatgtagataaatgtgacatattagagagaatcataacctt |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2695141 |
atatgtagataaatgtgacatattagagagaatcataacctt |
2695182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 296
Target Start/End: Complemental strand, 34386149 - 34385920
Alignment:
| Q |
79 |
tacctactccaaaaagaagtcttgtgaaaagggggatgggacgcctcatggaaaatgtgagcaattggtat--cataccttcaaaagc-----------c |
165 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||||||||| ||| ||||||||||| | |
|
|
| T |
34386149 |
tacctactccaaaaataagtgg-gtgaaaaggggt-tgggaagcctaatggaaaatgtgagcaattggtatatcattccttcaaaagcatacacaaccac |
34386052 |
T |
|
| Q |
166 |
ac-tagaccatgtaaacaatcacctgctttttatgtctcatggcaatagacaacaatgtcaaattgcacaaaagcattggtcagtgcaaaaggaatacag |
264 |
Q |
| |
|
|| || ||||| |||| |||||| ||||| |||||||||||||||| | ||||||||||| |||| |||||| ||||| | |||||| |||||||| || |
|
|
| T |
34386051 |
acctaaaccatataaataatcacatgcttcttatgtctcatggcaacggccaacaatgtcagattgtacaaaaacattgattagtgcagaaggaatatag |
34385952 |
T |
|
| Q |
265 |
catcatcatatgacacttgagttcattaactg |
296 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||| |
|
|
| T |
34385951 |
catcatcgtatgaaacttcagttcataaactg |
34385920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University