View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14357_low_5 (Length: 469)
Name: NF14357_low_5
Description: NF14357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14357_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 213 - 459
Target Start/End: Complemental strand, 5783530 - 5783284
Alignment:
| Q |
213 |
aatttatggcataattgaaattgaaacagtcatggatatgcttctttcactatcacacctttcactgacctccaaatttcggacatatatattttcatat |
312 |
Q |
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| T |
5783530 |
aatttatggcataattgaaattgaaacagtcctggatatgcttctttcactatcacacctttcactgacctccaaatttcggacatatatattttcatat |
5783431 |
T |
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| Q |
313 |
tatggagaagaattggtcgatcggtcaagaaccaacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaactgag |
412 |
Q |
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| T |
5783430 |
tatggagatgaattggtcgatcggtcaagaacctacccaccaaacacaatttgggatcatgttacgattcatcaacctcctcctcaatatcgaaactgag |
5783331 |
T |
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| Q |
413 |
acctcataattactcagatttaaatcctccaaatttatttatgtcat |
459 |
Q |
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| T |
5783330 |
acctcatcatcacttaaatttaaatcctccaaatttatttatgtcat |
5783284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5783563 - 5783533
Alignment:
| Q |
1 |
catcatactcaaggaactcaccaatataatt |
31 |
Q |
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| T |
5783563 |
catcatactcaaggaactcaccaatataatt |
5783533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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