View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14357_low_6 (Length: 460)
Name: NF14357_low_6
Description: NF14357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14357_low_6 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Complemental strand, 32709898 - 32709454
Alignment:
| Q |
14 |
aacacttaaataaaatgttaatgaatctcttatagtaattttgaattcaaattcagccacaaaaatacaatagtttgatctcatcaaactcgcgagatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
32709898 |
aacacttaaataaaatgttaatgaatcttttatagtaattttgaattcaaattcaaccataaaaatacaatagtttgatctcatcaaacttgagagatta |
32709799 |
T |
|
| Q |
114 |
atctttacgcgtaaagaatgtccaattgactccaacnnnnnnnngtaaagaacacaatccacaagtatttgtattgttactaagtggtcgtctttaatga |
213 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32709798 |
atatttacgcgtaaagagtatccaattgactccaacaaaaaa--gtaaagaacacaatccacaagtatttgtattgttactaagtggtcgtctttaatga |
32709701 |
T |
|
| Q |
214 |
tgatgatcatcactgaatcactgttttctctcttttgctctttctcacaaccacaaagaagggaagcttctaatttctaatgccccctactcaagtgtga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32709700 |
tgatgatcatcactgaatcactgttttctctcttttgctctttctcacaaccacaaagaagggaagcttctaatttctaatgccccctactcaagtgtga |
32709601 |
T |
|
| Q |
314 |
aacttttttgtctgcaaatcttaataatcttctcataaatgattggaacaagagaatttacatgtactacaactactagggcatgaaaaccttcaacttc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32709600 |
aacttttttgtctgcaaatcttaataatcttctcataaatgattggaacaagagaatttacatgtactacaactactagggcatgaaaaccttcaacctc |
32709501 |
T |
|
| Q |
414 |
ctcttcttcctacctccaacaacattgcctatcggtgagttctgttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32709500 |
ctcttcttcctacctccaacaacattgcctatcggtgagttctgttt |
32709454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University