View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14358_high_4 (Length: 310)

Name: NF14358_high_4
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14358_high_4
NF14358_high_4
[»] chr4 (18 HSPs)
chr4 (52-143)||(45862387-45862478)
chr4 (217-291)||(29248312-29248387)
chr4 (228-291)||(29249621-29249684)
chr4 (217-291)||(34739959-34740034)
chr4 (230-295)||(46427154-46427219)
chr4 (228-295)||(12566846-12566913)
chr4 (217-291)||(20962264-20962339)
chr4 (217-291)||(20963611-20963686)
chr4 (217-291)||(34741305-34741380)
chr4 (217-295)||(50879978-50880057)
chr4 (218-291)||(37600875-37600949)
chr4 (217-264)||(21994395-21994443)
chr4 (217-291)||(43537521-43537596)
chr4 (18-57)||(45862320-45862359)
chr4 (18-57)||(45881879-45881918)
chr4 (217-294)||(43537746-43537824)
chr4 (52-118)||(45881947-45882013)
chr4 (228-282)||(2438334-2438388)
[»] chr3 (14 HSPs)
chr3 (217-292)||(28208056-28208132)
chr3 (217-291)||(10615345-10615420)
chr3 (217-291)||(10616683-10616758)
chr3 (228-295)||(28207060-28207127)
chr3 (228-295)||(43930708-43930775)
chr3 (217-291)||(46610079-46610154)
chr3 (218-291)||(24528474-24528548)
chr3 (217-291)||(48288273-48288348)
chr3 (228-294)||(2011869-2011935)
chr3 (228-295)||(27318163-27318230)
chr3 (228-291)||(27360493-27360556)
chr3 (228-282)||(15093634-15093688)
chr3 (228-282)||(46596177-46596231)
chr3 (230-282)||(52396368-52396420)
[»] chr2 (22 HSPs)
chr2 (217-295)||(38876060-38876139)
chr2 (217-291)||(21903995-21904070)
chr2 (217-291)||(1903001-1903076)
chr2 (217-291)||(38815005-38815080)
chr2 (217-291)||(38936014-38936089)
chr2 (217-291)||(38937000-38937075)
chr2 (217-291)||(38937420-38937495)
chr2 (217-295)||(11101165-11101243)
chr2 (217-290)||(38876934-38877008)
chr2 (217-291)||(1904320-1904395)
chr2 (217-291)||(44366938-44367013)
chr2 (217-291)||(38813646-38813721)
chr2 (217-291)||(7576396-7576470)
chr2 (217-282)||(7577697-7577763)
chr2 (217-295)||(31551976-31552054)
chr2 (217-282)||(5969799-5969865)
chr2 (53-97)||(24351089-24351133)
chr2 (228-294)||(18249713-18249779)
chr2 (217-258)||(18416618-18416660)
chr2 (156-193)||(11101104-11101141)
chr2 (228-301)||(22293446-22293519)
chr2 (158-191)||(38935957-38935990)
[»] chr6 (8 HSPs)
chr6 (217-295)||(24234400-24234479)
chr6 (217-291)||(24914509-24914584)
chr6 (217-291)||(22056553-22056628)
chr6 (228-291)||(24235542-24235605)
chr6 (217-291)||(22058190-22058265)
chr6 (229-291)||(5999793-5999855)
chr6 (228-291)||(6000582-6000645)
chr6 (217-291)||(12322715-12322790)
[»] chr1 (14 HSPs)
chr1 (217-291)||(13917183-13917258)
chr1 (217-291)||(9441638-9441713)
chr1 (217-291)||(9442901-9442976)
chr1 (217-291)||(52084737-52084812)
chr1 (217-295)||(13916161-13916240)
chr1 (217-291)||(14625440-14625515)
chr1 (217-288)||(14626693-14626765)
chr1 (217-291)||(37194402-37194476)
chr1 (217-291)||(5560942-5561017)
chr1 (228-291)||(52083633-52083695)
chr1 (228-282)||(8930268-8930322)
chr1 (217-281)||(44311277-44311342)
chr1 (228-291)||(37193560-37193623)
chr1 (217-282)||(30536437-30536503)
[»] chr5 (18 HSPs)
chr5 (217-294)||(30798487-30798565)
chr5 (217-291)||(11956210-11956285)
chr5 (217-291)||(15060234-15060309)
chr5 (217-288)||(15616414-15616486)
chr5 (217-291)||(15061735-15061810)
chr5 (217-291)||(21776818-21776893)
chr5 (217-291)||(30796649-30796724)
chr5 (217-291)||(41064215-41064290)
chr5 (228-291)||(41065568-41065631)
chr5 (217-291)||(11957560-11957635)
chr5 (217-291)||(15615173-15615248)
chr5 (217-291)||(21775532-21775607)
chr5 (218-282)||(37274817-37274882)
chr5 (52-102)||(10520601-10520651)
chr5 (217-282)||(11438409-11438475)
chr5 (217-277)||(33750988-33751049)
chr5 (228-291)||(29520217-29520280)
chr5 (228-294)||(42003994-42004060)
[»] chr8 (15 HSPs)
chr8 (217-291)||(27163187-27163262)
chr8 (217-295)||(28574609-28574688)
chr8 (217-291)||(39809998-39810073)
chr8 (217-291)||(27164570-27164645)
chr8 (228-291)||(39808730-39808793)
chr8 (228-291)||(5704442-5704505)
chr8 (219-291)||(42349033-42349106)
chr8 (217-291)||(1601165-1601240)
chr8 (228-295)||(28561516-28561583)
chr8 (228-295)||(28567014-28567081)
chr8 (219-291)||(1601743-1601816)
chr8 (217-291)||(28561931-28562006)
chr8 (217-291)||(28567429-28567504)
chr8 (217-294)||(3252233-3252311)
chr8 (230-282)||(28575033-28575085)
[»] chr7 (13 HSPs)
chr7 (228-295)||(1831888-1831955)
chr7 (217-291)||(17763407-17763482)
chr7 (217-291)||(17764611-17764686)
chr7 (217-291)||(48170173-48170248)
chr7 (217-294)||(34158128-34158206)
chr7 (240-295)||(48168920-48168975)
chr7 (228-295)||(13772547-13772615)
chr7 (228-291)||(1830894-1830957)
chr7 (228-282)||(35891089-35891143)
chr7 (217-291)||(9554171-9554246)
chr7 (217-282)||(11056803-11056869)
chr7 (217-282)||(24436306-24436372)
chr7 (228-282)||(47637798-47637852)
[»] scaffold0176 (1 HSPs)
scaffold0176 (217-291)||(198-273)
[»] scaffold0250 (1 HSPs)
scaffold0250 (217-282)||(11489-11555)
[»] scaffold0040 (2 HSPs)
scaffold0040 (228-282)||(64585-64639)
scaffold0040 (217-282)||(65963-66029)
[»] scaffold0804 (1 HSPs)
scaffold0804 (240-288)||(2828-2876)
[»] scaffold0227 (1 HSPs)
scaffold0227 (219-282)||(24858-24922)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 45862387 - 45862478
Alignment:
Q  52 tacttgatagacagcttcatttatgaagttctcaacatcttctcttttctttcctgtatataatttgtggaagcccaaaggtgaatccattt 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  45862387 tacttgatagacaccttcatttatgaagttctcaacatcttctcttttctttcctgtatataatttgcggaagcccaaaggtgaattcattt 45862478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 29248312 - 29248387
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  29248312 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 29248387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 29249684 - 29249621
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  29249684 tgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 29249621  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 34739959 - 34740034
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  34739959 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 34740034  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 46427219 - 46427154
Alignment:
Q  230 taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  46427219 taaaataaagattcatcaagattgccccctgagccctgtgactcagcagaatctatgatgtgacat 46427154  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 12566913 - 12566846
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||    
T  12566913 tgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagctgaatctatgatgtgacat 12566846  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 20962264 - 20962339
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||    
T  20962264 agattccgtccttgtaaaatgaagattcttcaagattgcctcctgagccctgtgactcagcagaatctatgatgtg 20962339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 20963686 - 20963611
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||    
T  20963686 agattccgtccttgtaaaatgaagattcttcaagattgtcccctgagccctgtgactcagcagaatctatgatgtg 20963611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 34741380 - 34741305
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  34741380 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 34741305  T

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Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 50879978 - 50880057
Alignment:
Q  217 agattccgtcctg-taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    ||||||||||||| ||||||||||||| || | |||||||||||||| | ||||||||||||||||| ||||||||||||    
T  50879978 agattccgtcctggtaaaataaagatttttcaggattgccccctgagccttgtgactcagcagaatctatgatgtgacat 50880057  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 37600875 - 37600949
Alignment:
Q  218 gattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    ||||||||||| ||||||||||||||||||| ||||| || || |||||| |||||||||||||||  |||||||    
T  37600875 gattccgtccttgtaaaataaagattctttaggattggcctctaagtcctatgactcagcagaatctctgatgtg 37600949  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 21994395 - 21994443
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtc 264  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  21994395 agattccgtccttgtaaaataaagattctttaggattgccccctgagtc 21994443  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 43537521 - 43537596
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| | |||||||||||  | | |||||||||||||||||  |||||||    
T  43537521 agattccgtccttgtaaaataaagattcttcaggattgccccctatgccttgtgactcagcagaatctttgatgtg 43537596  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 45862320 - 45862359
Alignment:
Q  18 caaagtagtgcatgtacctcatcatcatagagtatacttg 57  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  45862320 caaagtagtgcatgtacctcatcatcatagagtatgcttg 45862359  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 45881879 - 45881918
Alignment:
Q  18 caaagtagtgcatgtacctcatcatcatagagtatacttg 57  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  45881879 caaagtagtgcatgtacctcatcatcatagagtatgcttg 45881918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 43537824 - 43537746
Alignment:
Q  217 agattccgtcctg-taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    ||||||||||||  ||||||||| |||||| | |||||||||||||| | | ||||||||||||||| ||||| |||||    
T  43537824 agattccgtccttctaaaataaaaattcttcaggattgccccctgagccatatgactcagcagaatctatgatatgaca 43537746  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 45881947 - 45882013
Alignment:
Q  52 tacttgatagacagcttcatttatgaagttctcaacatcttctcttttctttcctgtatataatttg 118  Q
    ||||||||||||| ||||||||||||||||||||| ||||  |||||  || |||||||| ||||||    
T  45881947 tacttgatagacaccttcatttatgaagttctcaatatctgttctttctttacctgtatagaatttg 45882013  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 2438334 - 2438388
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||| ||||||  ||| |||||||||||||||    
T  2438334 tgtaaaataaagattcttcaggattgctccctgacccctatgactcagcagaatc 2438388  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 28208132 - 28208056
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtga 292  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  28208132 agattccgtccttgtaaaataaagattcttcaagattgccccctgagtcctgtgactcagcagaatctatgatgtga 28208056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 10615345 - 10615420
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  10615345 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 10615420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 10616758 - 10616683
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  10616758 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 10616683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 28207060 - 28207127
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  28207060 tgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatatatgatgtgacat 28207127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 43930775 - 43930708
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  43930775 tgtaaaataaagattcttcaagattgccccctcagttctgtgactcagcagaatctatgatgtgacat 43930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 46610079 - 46610154
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||    
T  46610079 agattccgtccttgtaaaatgaagattcttcaagattgctccctgagccctgtgactcagcagaatcaatgatgtg 46610154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 24528548 - 24528474
Alignment:
Q  218 gattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||| ||| |||||||||||||||  |||||||    
T  24528548 gattccgtcctcgtaaaataaatattctttaagattgtcccctgagccctatgactcagcagaatctctgatgtg 24528474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 48288348 - 48288273
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| | ||| ||| |||||| ||||||||||| ||||||| ||||||||    
T  48288348 agattccgtccttgtaaaataaagattcttcaggatcgcctcctgagccctgtgactcaacagaatctatgatgtg 48288273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 2011935 - 2011869
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    |||||||||||||||||| | ||||| |||||||  ||| ||||||||||||||| |||||||||||    
T  2011935 tgtaaaataaagattcttcaggattgtcccctgaaccctatgactcagcagaatctatgatgtgaca 2011869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 27318163 - 27318230
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||||||||| | ||||| | | |||| |||||||||||| |||||  ||||||||||||    
T  27318163 tgtaaaataaagattcttcaggattgtctcatgagccctgtgactcagtagaatatatgatgtgacat 27318230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 27360493 - 27360556
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| | ||||  |||||||| ||| |||||||||| |||| ||||||||    
T  27360493 tgtaaaataaagattcttcaggattctcccctgagccctatgactcagcaaaatctatgatgtg 27360556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 15093688 - 15093634
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||||||||||  ||| ||||||| |||||||    
T  15093688 tgtaaaataaagattcttcaggattgccccctgacccctatgactcaacagaatc 15093634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 46596177 - 46596231
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | ||||||||| |||  ||| |||||||||||||||    
T  46596177 tgtaaaataaagattcttcaggattgccccatgacccctatgactcagcagaatc 46596231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 52396420 - 52396368
Alignment:
Q  230 taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||| ||||||||||| |  | |||||||||||||| ||||    
T  52396420 taaaataaagattcttcaagattgccccttatgccctgtgactcagcaaaatc 52396368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 38876060 - 38876139
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  38876060 agattccgtccttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtgacat 38876139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 21903995 - 21904070
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  21903995 agattccgtccttgtaaaataaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 21904070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 1903001 - 1903076
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  1903001 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 1903076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 38815080 - 38815005
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  38815080 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 38815005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 38936014 - 38936089
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  38936014 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatcaatgatgtg 38936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 38937000 - 38937075
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  38937000 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 38937075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 38937495 - 38937420
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  38937495 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 38937420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 11101165 - 11101243
Alignment:
Q  217 agattccgtcctgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  11101165 agattccgtccttgaaaataaagattcttcaagattgccccctgagcgttgtgactcagcagaatctatgatgtgacat 11101243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 38877008 - 38876934
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgt 290  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||||    
T  38877008 agattccgtccttgtaaaataaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgt 38876934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 1904395 - 1904320
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  1904395 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 1904320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 44366938 - 44367013
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  44366938 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagctctgtgactcagcagaatctatgatgtg 44367013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 38813646 - 38813721
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| || |||||| ||||||||||||| || ||||||||||||||||||| ||||||||    
T  38813646 agattccgtccttgtaaaatgaatattcttcaagattgccccctaagccctgtgactcagcagaatctatgatgtg 38813721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 7576396 - 7576470
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||| |||| | ||||||||||||||||| ||||||||    
T  7576396 agattccgtccttgtaaaatgaagattcttcaagattgcccc-tgagccatgtgactcagcagaatctatgatgtg 7576470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 7577763 - 7577697
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||| ||||||| | |||||||||||||||| | |||||||||||||||||    
T  7577763 agattccgtccttgtaaaatgaagattcatcaagattgccccctgagccttgtgactcagcagaatc 7577697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 31551976 - 31552054
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||| |||||||||| ||| || | | |||||||||||| | ||||||||||||||||| ||||||||||||    
T  31551976 agattccgtccttgtaaaataaa-atttttcatgtttgccccctgagccttgtgactcagcagaatctatgatgtgacat 31552054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 5969799 - 5969865
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||||  ||| |||||||||||||||    
T  5969799 agattccgtccttgtaaaataaagattcttaatgattgtcccctgacccctatgactcagcagaatc 5969865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 24351133 - 24351089
Alignment:
Q  53 acttgatagacagcttcatttatgaagttctcaacatcttctctt 97  Q
    |||||||| ||| ||||||||||||||||||||| ||||||||||    
T  24351133 acttgataaacaccttcatttatgaagttctcaatatcttctctt 24351089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 18249713 - 18249779
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    |||||||| ||||||||| | ||||||||||| || ||  |||||||||||||||  ||||||||||    
T  18249713 tgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatctttgatgtgaca 18249779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 18416660 - 18416618
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccc 258  Q
    |||||||||||| ||||||||||||||||||| ||||||||||    
T  18416660 agattccgtcctcgtaaaataaagattctttaggattgccccc 18416618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 11101104 - 11101141
Alignment:
Q  156 agctttacccccgtaatataggacacttttggttttcc 193  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  11101104 agctttatccctgtaatataggacacttttggttttcc 11101141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 22293519 - 22293446
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacatattctt 301  Q
    |||||||||||||||||| |  |||||||||  || ||| ||| ||||||||||| |||| ||||||| |||||    
T  22293519 tgtaaaataaagattcttcagtattgccccccaagccctttgagtcagcagaatctatgacgtgacattttctt 22293446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 38935957 - 38935990
Alignment:
Q  158 ctttacccccgtaatataggacacttttggtttt 191  Q
    ||||||||| ||||||||||||||||||||||||    
T  38935957 ctttacccctgtaatataggacacttttggtttt 38935990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 24234400 - 24234479
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24234400 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtgacat 24234479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 24914509 - 24914584
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  24914509 agattccgtccttgtaaaatgaagattcttcaagattgccccctaagtcctgtgactcagcagaatctatgatgtg 24914584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 22056553 - 22056628
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||  |||||||||||||||||| ||||||||    
T  22056553 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagctctgtgactcagcagaatctatgatgtg 22056628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 24235605 - 24235542
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  24235605 tgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 24235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 22058265 - 22058190
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  22058265 agattccgtccttgtaaaatgaagattcttcaagattgccccttgagccctatgactcagcagaatctatgatgtg 22058190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 5999793 - 5999855
Alignment:
Q  229 gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    ||||||||||||||||| | ||||||||||||||  |||||||||||||||||| ||||||||    
T  5999793 gtaaaataaagattcttcaggattgccccctgagctctgtgactcagcagaatctatgatgtg 5999855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 6000645 - 6000582
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| | |||||||||||  | |||||||||||||||||||  |||||||    
T  6000645 tgtaaaataaagattcttcaggattgccccctatgccctgtgactcagcagaatctttgatgtg 6000582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 12322790 - 12322715
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| | ||||||||||| || ||  |||||||||||||||  |||||||    
T  12322790 agattccgtccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatctttgatgtg 12322715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 13917258 - 13917183
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||    
T  13917258 agattccgtccttgtaaaataaagattcttcaagattgcctcctgagccctgtgactcagcagaatccatgatgtg 13917183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 9441638 - 9441713
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  9441638 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 9441713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 9442976 - 9442901
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  9442976 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 9442901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 52084812 - 52084737
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||    
T  52084812 agattccgtccttgtaaaataaagattcttcaagattgccccctgagccatgtgactcagcagaatctatgatgtg 52084737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 13916161 - 13916240
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||| ||||||||||||||||| |||||||||| |||||  ||||||||||||| |||| ||||||||||||    
T  13916161 agattccgtccttgtaaaataaagattcttcaagattgcccactgagcgctgtgactcagcacaatctatgatgtgacat 13916240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 14625440 - 14625515
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  14625440 agattccgtccttgtaaaatgaagattcttcaagattgccctctgagccctgtgactcagcagaatctatgatgtg 14625515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 14626765 - 14626693
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgat 288  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| || |||||||||||||||| |||||    
T  14626765 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccccgtgactcagcagaatctatgat 14626693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 37194476 - 37194402
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||| || |||||||||||||||| ||||||||    
T  37194476 agattccgtccttgtaaaataaagattcttcaagattg-cccctgagccccgtgactcagcagaatctatgatgtg 37194402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 5560942 - 5561017
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| |||||||||||||  |  ||||||||||||||||||  |||||||    
T  5560942 agattccgtccttgtaaaataaagattcttcaagattgccccctatgctctgtgactcagcagaatctttgatgtg 5561017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 52083633 - 52083695
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||| |||||| || |||||||||||||||| ||||||||||||||||||| ||||||||    
T  52083633 tgtaaaatgaagatt-ttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 52083695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 8930322 - 8930268
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||||||||||  ||| |||||||||||||||    
T  8930322 tgtaaaataaagattcttcaggattgccccctgacccctatgactcagcagaatc 8930268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 44311277 - 44311342
Alignment:
Q  217 agattccgtcc-tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaat 281  Q
    ||||||||||| |||||||||||||||||| |||||||||||| | | ||| ||| ||||||||||    
T  44311277 agattccgtccatgtaaaataaagattcttcaagattgccccccgtgccctttgaatcagcagaat 44311342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 37193560 - 37193623
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| |||||||||||||  |  |||||||| |||||||||  |||||||    
T  37193560 tgtaaaataaagattcttcaagattgccccctatgcactgtgactgagcagaatctttgatgtg 37193623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 30536437 - 30536503
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||||||||||||| | ||||||| |||||  ||| ||||||| |||||||    
T  30536437 agattccgtccttgtaaaataaagattcttcatgattgcctcctgatccctatgactcatcagaatc 30536503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 30798565 - 30798487
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  30798565 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtgaca 30798487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 11956210 - 11956285
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  11956210 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 11956285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 15060234 - 15060309
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  15060234 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 15060309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 15616486 - 15616414
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgat 288  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| |||||    
T  15616486 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgat 15616414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 15061810 - 15061735
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  15061810 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 15061735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 21776893 - 21776818
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||    
T  21776893 agattccgtccttgtaaaatgaagattcttcaagattgccccctaagccctgtgactcagcagaatctatgatgtg 21776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 30796649 - 30796724
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||    
T  30796649 agattccgtccttgtaaaatgaagattcttcaagattgcaccctgagccctgtgactcagcagaatctatgatgtg 30796724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 41064215 - 41064290
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  41064215 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 41064290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 41065631 - 41065568
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  41065631 tgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 41065568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 11957635 - 11957560
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| | ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  11957635 agattccgtccttgtaaaatgacgattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 11957560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 15615173 - 15615248
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||| | ||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||    
T  15615173 agattccgtccttgtaaattgaagattcttcaagattgccccctgagccatgtgactcagcagaatctatgatgtg 15615248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 21775532 - 21775607
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  21775532 agattccgtccttgtaaaatgaagattcttcaagattgccccctgaaccctatgactcagcagaatctatgatgtg 21775607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 37274817 - 37274882
Alignment:
Q  218 gattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    ||||||||||| ||||||||||||||||| | ||||||||||| | |||| |||||||||||||||    
T  37274817 gattccgtccttgtaaaataaagattcttcaggattgccccctaactcctatgactcagcagaatc 37274882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 10520651 - 10520601
Alignment:
Q  52 tacttgatagacagcttcatttatgaagttctcaacatcttctcttttctt 102  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||| ||||    
T  10520651 tacttgatagacaccttcatttatgaagttttcaacttcttctcttctctt 10520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 11438409 - 11438475
Alignment:
Q  217 agattccgtcc-tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    ||||||||||| |||||||||||||||||| | ||||| |||||||  ||| |||||||||||||||    
T  11438409 agattccgtccatgtaaaataaagattcttcaggattgtcccctgacccctatgactcagcagaatc 11438475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 33750988 - 33751049
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagca 277  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||  ||| ||||||||||    
T  33750988 agattccgtccttgtaaaataaagattcttcaggattgccccctgatccctatgactcagca 33751049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 29520217 - 29520280
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||| ||||||||| | ||||||||||| || ||  ||||||||||||||| ||||||||    
T  29520217 tgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatctatgatgtg 29520280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 42003994 - 42004060
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    ||||||||||||||||||||   ||||||||| || ||  |||||||||||||||  ||||||||||    
T  42003994 tgtaaaataaagattctttagatttgccccctaagcccattgactcagcagaatctttgatgtgaca 42004060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 27163187 - 27163262
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  27163187 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 27163262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 28574609 - 28574688
Alignment:
Q  217 agattccgtcctgt-aaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  28574609 agattccgtccttttaaaataaagattcttcaagattgccccctgaaccctgtgactcagcagaatctatgatgtgacat 28574688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 39810073 - 39809998
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  39810073 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 39809998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 27164645 - 27164570
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  27164645 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctatgactcagcagaatctatgatgtg 27164570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 39808730 - 39808793
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  39808730 tgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 39808793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 5704505 - 5704442
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  5704505 tgtaaaataaagattcttcaagattaccccctgagccctgtgactcagcagtatctatgatgtg 5704442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 42349033 - 42349106
Alignment:
Q  219 attccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||| ||||||| ||||||||| ||||||| |||||||  ||||||||||||||||||| ||||||||    
T  42349033 attccgtccttgtaaaatgaagattcttcaagattgtcccctgaaccctgtgactcagcagaatctatgatgtg 42349106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 1601240 - 1601165
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| | ||||||||||| || || ||||||||||||||||  |||||||    
T  1601240 agattccgtccttgtaaaatgaagattcttcacgattgccccctaagcccagtgactcagcagaatctttgatgtg 1601165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 28561516 - 28561583
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||| ||||||| ||||||||| | |||| ||||||||||| |||| || ||||||||||||    
T  28561516 tgtaaaataaggattcttcaagattgccgcttgagccctgtgactcaacagagtctatgatgtgacat 28561583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 28567014 - 28567081
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||| ||||||| ||||||||| | |||| ||||||||||| |||| || ||||||||||||    
T  28567014 tgtaaaataaggattcttcaagattgccgcttgagccctgtgactcaacagagtctatgatgtgacat 28567081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 1601743 - 1601816
Alignment:
Q  219 attccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||| ||||||| ||||||||| | ||||||||||| || || ||||||||||||||||  |||||||    
T  1601743 attccgtcctagtaaaatgaagattcttcacgattgccccctaagcccagtgactcagcagaatctttgatgtg 1601816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 28562006 - 28561931
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| ||||||| | |||  |  ||||||||||||||||||  |||||||    
T  28562006 agattccgtccttgtaaaataaagattcttcaagattgtcacctatgcactgtgactcagcagaatctttgatgtg 28561931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 28567504 - 28567429
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||||||||||||| ||||||| | |||  |  ||||||||||||||||||  |||||||    
T  28567504 agattccgtccttgtaaaataaagattcttcaagattgtcacctatgcactgtgactcagcagaatctttgatgtg 28567429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 3252233 - 3252311
Alignment:
Q  217 agattccgtcctg-taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    ||||||||||||  |||||||||||||||| | ||||||||||| || ||  |||||||| ||||||  ||||||||||    
T  3252233 agattccgtccttataaaataaagattcttcacgattgccccctaagcccattgactcagtagaatctctgatgtgaca 3252311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 28575085 - 28575033
Alignment:
Q  230 taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  28575085 taaaataaagattcttcaagattgcccactatgcactgtgactcagcagaatc 28575033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 1831955 - 1831888
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||    
T  1831955 tgtaaaataaagattcttcaagattgccccctaagccctgtgactcagcagaatctatgatgtgacat 1831888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 17763407 - 17763482
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  17763407 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 17763482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 17764686 - 17764611
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  17764686 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 17764611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 48170248 - 48170173
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  48170248 agattccgtccttgtaaaatgaagattcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtg 48170173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 34158128 - 34158206
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgaca 294  Q
    |||||||||||| ||||||| ||||||||| |||||||||||| ||  ||||||||||||||||||| |||||||||||    
T  34158128 agattccgtccttgtaaaatgaagattcttcaagattgcccccagatccctgtgactcagcagaatctatgatgtgaca 34158206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 48168920 - 48168975
Alignment:
Q  240 attctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtgacat 295  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  48168920 attcttcaagattgccccctgagccctgtgactcagcagaatctatgatgtgacat 48168975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 13772615 - 13772547
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgac-tcagcagaatccatgatgtgacat 295  Q
    |||||||||||||||||| |||||| |||||||||  ||||||| ||||||||||| ||||||||||||    
T  13772615 tgtaaaataaagattcttcaagattaccccctgagctctgtgacttcagcagaatcaatgatgtgacat 13772547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 1830894 - 1830957
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||| ||| ||||    
T  1830894 tgtaaaataaagattcttcaagattgctccctgagccctgtgacttagcagaatctatggtgtg 1830957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 35891089 - 35891143
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||||||||||  ||| |||||||||||||||    
T  35891089 tgtaaaataaagattcttcaggattgccccctgacccctatgactcagcagaatc 35891143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 9554246 - 9554171
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    |||||||||||| ||||||| ||||||||| | ||||||||||| || ||  |||||||||| |||| ||||||||    
T  9554246 agattccgtccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcataatctatgatgtg 9554171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 11056803 - 11056869
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||| ||||||||| | ||||||||||| || ||  |||||||||||||||    
T  11056803 agattccgtccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatc 11056869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 24436372 - 24436306
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||||||||||| | | |||||||||||||  | | |||||||||||||||    
T  24436372 agattccgtccttgtaaaataaagattcctcaggattgccccctgacccatatgactcagcagaatc 24436306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 47637798 - 47637852
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||||||||||  ||| ||||||| |||||||    
T  47637798 tgtaaaataaagattcttcatgattgccccctgacccctatgactcatcagaatc 47637852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 273 - 198
Alignment:
Q  217 agattccgtcctg-taaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatccatgatgtg 291  Q
    ||||||||||||  |||||| ||||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  273 agattccgtccttataaaatgaagattcttcaagattgccccctgagccctttgactcagcagaatctatgatgtg 198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 11555 - 11489
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||  ||| |||||||||||||||    
T  11555 agattccgtccttgtaaaataaagattcttcaggattgccccctgacccctatgactcagcagaatc 11489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 64585 - 64639
Alignment:
Q  228 tgtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||||||||| | |||||||||||||  |||||||||||||||||||    
T  64585 tgtaaaataaagattcttcaggattgccccctgacccctgtgactcagcagaatc 64639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 66029 - 65963
Alignment:
Q  217 agattccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||||| ||||||| ||||||||| | ||||||||||| || ||  |||||||||||||||    
T  66029 agattccgtccttgtaaaatgaagattcttcacgattgccccctaagcccattgactcagcagaatc 65963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 2828 - 2876
Alignment:
Q  240 attctttaagattgccccctgagtcctgtgactcagcagaatccatgat 288  Q
    |||||| |||||||||||||||| || |||||||||||||||| |||||    
T  2828 attcttcaagattgccccctgagccccgtgactcagcagaatctatgat 2876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 24922 - 24858
Alignment:
Q  219 attccgtcct-gtaaaataaagattctttaagattgccccctgagtcctgtgactcagcagaatc 282  Q
    |||||||||| ||||||||||||||||| | |||||||||||||  ||| |||||||||| ||||    
T  24922 attccgtccttgtaaaataaagattcttcaggattgccccctgacccctatgactcagcaaaatc 24858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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