View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14358_high_5 (Length: 286)

Name: NF14358_high_5
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14358_high_5
NF14358_high_5
[»] chr7 (1 HSPs)
chr7 (1-286)||(44670596-44670887)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 44670887 - 44670596
Alignment:
Q  1 gtaattaaaatctatttgtttgtgctaatcgcaaattggcacttagcacaagcgttttcaagaatgcatacatgagataagagtaaaacaaaagcatata 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44670887 gtaattaaaatcaatttgtttgtgctaatcgcaaattggcacttagcacaaatgttttcaagaatgcatacatgagataagagtaaaacaaaagcatata 44670788  T
Q  101 caatgcattatcagatattgatgaccgtaacattaatgcatttgtacattgaataaaagtactag------ctattagtagccatgagtgatttgagagc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||      |||||||||||||||||||||||||||||    
T  44670787 caatgcattatcagatattgatgaccgtaacattaatgcatttgtacattgcataaaagtaatagctattactattagtagccatgagtgatttgagagc 44670688  T
Q  195 attttttcttgatccatcgaagtcctttcttgagtgtagctttaactttcccttccacgctgtgaactttatacttggctatccttttcttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44670687 attttttcttgatccatcgaagtcctttcttgagtgtagctttaactttcccttccacgctgtgaactttatacttggctatccttttcttc 44670596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University