View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14358_high_9 (Length: 236)
Name: NF14358_high_9
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14358_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 21818844 - 21818632
Alignment:
| Q |
13 |
gtcttttcatgacttttgaacgaatcccatgcaaaactagaataaaatacattcaaactacctactttaactctaaaattgcactataaa-----ctcta |
107 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| ||||| |
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| T |
21818844 |
gtcttttcatgacttttgaacgaatcccattcaaaactagaataaaatacattcaaactaactgctttaactctaagattgcactataaattaaactcta |
21818745 |
T |
|
| Q |
108 |
tgatttcctgtcatcacttccactccgaatggtaggtaggtattagaaattagaataaagattgattgaatacattgaatacctttccatgaaatcgaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21818744 |
tgatttcctgtcatcacttccactccgaatggtaggtatatattagaaattagaataaagattgattgaatacattgaatacctttccatgaaattgaca |
21818645 |
T |
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| Q |
208 |
tgcactaaacaac |
220 |
Q |
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||||||||||||| |
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| T |
21818644 |
tgcactaaacaac |
21818632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 17126692 - 17126646
Alignment:
| Q |
45 |
aaaactagaataaaatacattcaaactacctactttaactctaaaat |
91 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
17126692 |
aaaactcgaataaaatacattcaaaccgcctactttaactctaaaat |
17126646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 30919614 - 30919650
Alignment:
| Q |
55 |
taaaatacattcaaactacctactttaactctaaaat |
91 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
30919614 |
taaaatacattcaaactagctactttaactctaaaat |
30919650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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