View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14358_low_1 (Length: 772)
Name: NF14358_low_1
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14358_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-179; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 34883518 - 34883876
Alignment:
| Q |
16 |
atagggtatattgttatattctaagggtatgtcatgaatatatatgacctgggatggaaggattcaaaccttcgaataacgggaccaaaacccgtcgcct |
115 |
Q |
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| T |
34883518 |
atagggtatattgttatattgtaagggtatgttatgaatatatatgacctgggacgaaaggattcaaaccttcgaataacagaaccaaaacccgtcgcct |
34883617 |
T |
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| Q |
116 |
taccgcttggccacgccacattttggtagggtgtctgggtgttgttttgtgtattttggcttgatttgtaatctctagctagtgcctgttgagaccatct |
215 |
Q |
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| T |
34883618 |
taccgcttggccacaccccattttggtagggtgtctgggtgttgttttgtgtattttggcttgatttgtaatctctagctagtgcctattgagaccatct |
34883717 |
T |
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| Q |
216 |
ggtgtagctccattggagtgtgtacctttgtagaattgtatgattttcttagtccaattttctagcttatgatagggtgggacctcaacccttcatagaa |
315 |
Q |
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| T |
34883718 |
ggtgtagctccattggagtgtgtacctttgtagaattgtatgattttcttagtccaattttctagcttatgatagggtgggacctcaacccttcatagaa |
34883817 |
T |
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| Q |
316 |
gttgggtagagtgttctttgatgccgagttcgactcttgatgaaatttatttttatcgg |
374 |
Q |
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| T |
34883818 |
gttgggtagagtgttctttgatgccgagttagactcttgatgaaatttatttttatcgg |
34883876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 473 - 668
Target Start/End: Original strand, 34883969 - 34884164
Alignment:
| Q |
473 |
gttatttgaaagatcgtattttcataaagttatggacctctgttgacagacatttattaaacttttccataaacctaccgtgtcttgtgccttttccttg |
572 |
Q |
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| T |
34883969 |
gttatttgaaagatcgtattttcataaagttatggacctctgttgacagacatttattaaacttttccataaacctaccgtgtcttgtgccttttccttg |
34884068 |
T |
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| Q |
573 |
tatgtgaagtgctatatttccggtttcacttgtttaacaaagagtgtctgcttttcaattatgtataaaaacttctgtaagtgttcgaaagcaaga |
668 |
Q |
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| T |
34884069 |
tatgtgaagtgctatattttcggtttcacttgtttaacaaagagtgtctgcttttcaattatgtataaaaacttctgtaagtgttcgaaagcaaga |
34884164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 40602902 - 40602939
Alignment:
| Q |
258 |
attttcttagtccaattttctagcttatgatagggtgg |
295 |
Q |
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| T |
40602902 |
attttcttagtctaattttctagcatatgatagggtgg |
40602939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 18062882 - 18062997
Alignment:
| Q |
23 |
atattgttatattctaagggtatgtcatgaatatatatgacctgggatggaaggattcaaaccttcgaataacgggaccaaaacccgtcgccttaccgct |
122 |
Q |
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| T |
18062882 |
atattcttatattctaaggatatgtcatgaatatccatgacctgggacggaaggattcgaaccttcgaataacgggaccaaaacccgtcgccttaccgct |
18062981 |
T |
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| Q |
123 |
tggccacgccacattt |
138 |
Q |
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| T |
18062982 |
tggccacgccccattt |
18062997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 5881017 - 5880930
Alignment:
| Q |
52 |
aatatatatgacctgggatggaaggattcaaaccttcgaataacgggaccaaaacccgtcgccttaccgcttggccacgccacatttt |
139 |
Q |
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| T |
5881017 |
aatagatatgatctcggacggaagggttcgaacctctgaataacgggaccaaaacccgttgccttaccacttggccacgccccatttt |
5880930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 206546 - 206620
Alignment:
| Q |
64 |
ctgggatggaaggattcaaaccttcgaataacgggaccaaaacccgtcgccttaccgcttggccacgccacattt |
138 |
Q |
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| T |
206546 |
ctgggacggaaggattcgaacctccgagtaacgggaccaaaacccgctgccttaccacttggccacgccccattt |
206620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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