View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14358_low_2 (Length: 479)

Name: NF14358_low_2
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14358_low_2
NF14358_low_2
[»] chr8 (3 HSPs)
chr8 (27-479)||(31686786-31687238)
chr8 (286-479)||(37928667-37928848)
chr8 (147-208)||(16839708-16839769)
[»] chr4 (7 HSPs)
chr4 (146-288)||(22652694-22652836)
chr4 (97-258)||(20509753-20509912)
chr4 (198-293)||(9830844-9830939)
chr4 (133-179)||(18921306-18921352)
chr4 (146-194)||(40434551-40434599)
chr4 (144-178)||(20457311-20457345)
chr4 (133-214)||(5634250-5634331)
[»] chr2 (6 HSPs)
chr2 (145-282)||(27008653-27008790)
chr2 (147-262)||(39116826-39116941)
chr2 (146-186)||(9584060-9584100)
chr2 (138-260)||(9840166-9840288)
chr2 (133-179)||(1998352-1998398)
chr2 (133-179)||(40427584-40427630)
[»] chr5 (7 HSPs)
chr5 (97-258)||(12864068-12864227)
chr5 (138-288)||(27483221-27483371)
chr5 (97-265)||(12832086-12832252)
chr5 (133-214)||(19315583-19315664)
chr5 (133-194)||(42457099-42457160)
chr5 (139-298)||(25325525-25325684)
chr5 (146-179)||(4926216-4926249)
[»] chr6 (4 HSPs)
chr6 (102-237)||(12687552-12687685)
chr6 (144-266)||(14436518-14436640)
chr6 (102-237)||(27104638-27104771)
chr6 (102-237)||(27146447-27146580)
[»] chr7 (4 HSPs)
chr7 (147-260)||(41528794-41528907)
chr7 (133-289)||(40682097-40682253)
chr7 (146-205)||(10274887-10274946)
chr7 (369-417)||(34236836-34236884)
[»] chr1 (7 HSPs)
chr1 (147-237)||(6724312-6724402)
chr1 (147-297)||(27364296-27364446)
chr1 (139-229)||(25392928-25393018)
chr1 (133-179)||(25529503-25529549)
chr1 (133-178)||(48611407-48611452)
chr1 (144-184)||(23451535-23451575)
chr1 (97-260)||(34704060-34704221)
[»] chr3 (3 HSPs)
chr3 (148-262)||(51346805-51346919)
chr3 (138-231)||(25845115-25845208)
chr3 (146-187)||(35503340-35503381)


Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 27 - 479
Target Start/End: Complemental strand, 31687238 - 31686786
Alignment:
Q  27 tggtgtggtgtcttttaaagttaggttcagtaggttctatgaattattggtgtttacagaaatatcagtttttgatatgagtcagttgggttggggtcaa 126  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31687238 tggtgtggtgtcttttaaagttaggttcagtaggttatatgaattattggtgtttaaagaaatatcagtttttgatatgagtcagttgggttggggtcaa 31687139  T
Q  127 gagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggt 226  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31687138 gagggtgtgacgcgtggaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgtacatttgcaggt 31687039  T
Q  227 tgatagggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatataatttcctatcagctcatcctccatttgtttca 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31687038 tgatagggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatataatttcctatcagctcatcctccatttgtttca 31686939  T
Q  327 tcggttcctgttgctacgatgtggcataaagatgtcctgttaaaggttgtgctgtttgcttaacgtttgttccgagacaagctgcctacaaggacaattt 426  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31686938 tcggttcctgttgcttcgatgtggcataaagatgtcctgttaaaggttgtgctgtttgcttgacgtttgttccgagacaagctgcctacaaggacaattt 31686839  T
Q  427 gcattggcgtggtgttcttgatcatgacgcaaggatgtgtgtggctgggtgtg 479  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31686838 gcattggcgtggtgttcttgatcgtgacgcaaggatgtgtgtggctgggtgtg 31686786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 286 - 479
Target Start/End: Original strand, 37928667 - 37928848
Alignment:
Q  286 gtgcatataatttcctatcagctcatcctccatttgtttcatcggttcctgttgctacgatgtggcataaagatgtcctgttaaaggttgtgctgtttgc 385  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||   || |||||||||||||             |||||||| |||||    
T  37928667 gtgcatataatttcctatcagttcatcctccacttgtttcatcggttcctgttgactcgttgtggcataaaga-------------gttgtgctttttgc 37928753  T
Q  386 ttaacgtttgttccgagacaagctgcctacaa-ggacaatttgcattggcgtggtgttcttgatcatgacgcaaggatgtgtgtggctgggtgtg 479  Q
    ||  |||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  37928754 ttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcgtggtgttcttgatcgtgactcaaggatgtgtgtggctgggtgtg 37928848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 16839708 - 16839769
Alignment:
Q  147 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttca 208  Q
    |||||| ||||| | ||||||||||| ||||||| |||||| ||| |||| |||||||||||    
T  16839708 tggaggaggaggctttttgcgtgggaagaggaggtggtgggggaactaatcttattacttca 16839769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 146 - 288
Target Start/End: Original strand, 22652694 - 22652836
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatgg 245  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||| | |||||| | |||||||||||   |||||||||| ||| |||||  | ||||    
T  22652694 gtggaggtggaggttgtttgcgtgggaggaggagatggtgggagaacttatgttactgcttcataatgtgactttgcaggttaataaggatgatagatgg 22652793  T
Q  246 ttgtggacattggaatcatctaatgtattctctgttcggagtg 288  Q
    || |||||||| ||| ||||| |||  || |||||||| ||||    
T  22652794 ttatggacatttgaaacatctcatgctttttctgttcgtagtg 22652836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 258
Target Start/End: Original strand, 20509753 - 20509912
Alignment:
Q  97 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 196  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | ||||||||||| |||||||||||||||||||||  |||||| |||||  |    
T  20509753 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggcggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 20509850  T
Q  197 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattgg 258  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||||||||| ||||    
T  20509851 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttgg 20509912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 293
Target Start/End: Original strand, 9830844 - 9830939
Alignment:
Q  198 ttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatat 293  Q
    ||||| ||||| ||||||  ||||||||| || | ||||| ||||||| | ||||| |||||| | |||||||| |||||||||||||||||||||    
T  9830844 ttatttcttcacaatgttattttgcaggtcgaaaaggatgacaaatggctttggactttggaaacctctaatgttttctctgttcggagtgcatat 9830939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 18921306 - 18921352
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 179  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||    
T  18921306 gtgatgcgtggaggtggaggaggaggttgtttgcgtgggaggaggag 18921352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 40434551 - 40434599
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaatta 194  Q
    ||||||||||||||||||||||||||| |||||| || |||| ||||||    
T  40434551 gtggaggcggaggttgtttgcgtgggaagaggagtagttgggggaatta 40434599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 20457311 - 20457345
Alignment:
Q  144 aggtggaggcggaggttgtttgcgtgggaggagga 178  Q
    ||||||||||||||||||||||| |||||||||||    
T  20457311 aggtggaggcggaggttgtttgcttgggaggagga 20457345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 5634250 - 5634331
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgt 214  Q
    |||| ||||| | ||||||||||||| |||||| |||||| |||||| ||||||| ||| ||   ||||||||||| |||||    
T  5634250 gtgaggcgtggaagtggaggcggaggctgtttgtgtgggaagaggagaaggtgggggaactatgtttattacttcacaatgt 5634331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 27008653 - 27008790
Alignment:
Q  145 ggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatg 244  Q
    |||||||||  | ||||||||||||||||||||||  |||||| ||| | || ||| |||||||||||||   |||||||||||||| ||| | || |||    
T  27008653 ggtggaggcatatgttgtttgcgtgggaggaggagttggtgggggaacttatattactacttcataatgtgactttgcaggttgataaggaagacatatg 27008752  T
Q  245 gttgtggacattggaatcatctaatgtattctctgttc 282  Q
    | | |||||||||||||||||| |||  ||||||||||    
T  27008753 gctatggacattggaatcatctcatgctttctctgttc 27008790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 39116826 - 39116941
Alignment:
Q  147 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggt 246  Q
    |||||||| |||||||||||||||||||||||   |||||| ||| | || ||| ||||||||||||||   ||||||||| ||| |||||  ||||||     
T  39116826 tggaggcgtaggttgtttgcgtgggaggaggaattggtgggggaacttattttactacttcataatgttaccttgcaggttaatatggatgataaatggc 39116925  T
Q  247 tgtggacattggaatc 262  Q
    | ||||| ||||||||    
T  39116926 tttggactttggaatc 39116941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 9584100 - 9584060
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgg 186  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9584100 gtggaggcggaggttgtttgcgtgggaggaggagcaggtgg 9584060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 260
Target Start/End: Original strand, 9840166 - 9840288
Alignment:
Q  138 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 237  Q
    ||||| ||||||||||||| | ||||||||||||||||||||  |||||| ||| | || |||   ||||| |||||   |||||||||| | | |||||    
T  9840166 gcgtggaggtggaggcggaagctgtttgcgtgggaggaggagttggtgggggaacttattttacagcttcaaaatgtgactttgcaggttaacaaggatg 9840265  T
Q  238 ccaaatggttgtggacattggaa 260  Q
      |||||||| ||||||||||||    
T  9840266 ataaatggttatggacattggaa 9840288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 1998398 - 1998352
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 179  Q
    |||| ||||| ||||||||| || |||||||||||||||||||||||    
T  1998398 gtgatgcgtggaggtggaggagggggttgtttgcgtgggaggaggag 1998352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 40427630 - 40427584
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 179  Q
    ||||| |||| ||||||||| | ||||||||||||||||||||||||    
T  40427630 gtgacacgtggaggtggaggtgtaggttgtttgcgtgggaggaggag 40427584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 12864227 - 12864068
Alignment:
Q  97 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 196  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | ||||||||||| |||||||||||||||||||||  |||||| |||||  |    
T  12864227 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggcggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 12864130  T
Q  197 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattgg 258  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||||||||| ||||    
T  12864129 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggttgtggacgttgg 12864068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 138 - 288
Target Start/End: Complemental strand, 27483371 - 27483221
Alignment:
Q  138 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 237  Q
    ||||| || ||||||||||||||||||| |||||||||| ||  | | || |||||  ||||||||||||| |||||   |||||||||||| | |||||    
T  27483371 gcgtggagttggaggcggaggttgtttgtgtgggaggagcagatgttaggggaattgttgttattacttcacaatgtatttttgcaggttgacaaggatg 27483272  T
Q  238 ccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtg 288  Q
     ||||||| | || || ||||| || |||||||| | ||||||||| ||||    
T  27483271 acaaatggctatgtactttggattcttctaatgtttactctgttcgtagtg 27483221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 97 - 265
Target Start/End: Complemental strand, 12832252 - 12832086
Alignment:
Q  97 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 196  Q
    ||||||||| |||||||||||||||   | ||||||| |  |||||  | |||||| |||| |||||||||||||||||||||  |||||| |||||  |    
T  12832252 tttgatatgtgtcagttgggttgggaggaggagggtggg--gcgtggcgttggaggtggagtttgtttgcgtgggaggaggagttggtgggggaattcgt 12832155  T
Q  197 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaatcatc 265  Q
     ||||| ||||| ||||||  |||||||||| |||  ||||  |||||| ||||||| |||||| ||||    
T  12832154 attattgcttcaaaatgttactttgcaggttaataatgatgataaatggctgtggacgttggaaacatc 12832086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 19315664 - 19315583
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgt 214  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||  |||||| ||| | |||||| | ||||| |||||    
T  19315664 gtgaggcgtggaggtggaggcggaggttgtttgcgtgggaggaggagttggtgggggaacttatgttactgcttcacaatgt 19315583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 42457099 - 42457160
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaatta 194  Q
    |||| ||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  42457099 gtgaggcgtggaagtggaggcggaggttgtttgcgtgggaggaggagcaggtgggggaatta 42457160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 298
Target Start/End: Original strand, 25325525 - 25325684
Alignment:
Q  139 cgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgc 238  Q
    |||| |||||| ||| |||||||||||||||||||||| ||||| |||| ||| |  || |||| ||||| |||||| ||||  ||||||| | |  ||     
T  25325525 cgtggaggtggtggcagaggttgtttgcgtgggaggagaaggagatgggggaactgctgatattgcttcaaaatgttaatttataggttgagaagattga 25325624  T
Q  239 caaatggttgtggacattggaatcatctaatgtattctctgttcggagtgcatataattt 298  Q
     |||||| | |||||||||||||| |||||| |||||  |||||  ||||| ||||||||    
T  25325625 aaaatggctttggacattggaatcttctaatatattcattgttcctagtgcctataattt 25325684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 4926216 - 4926249
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggag 179  Q
    ||||||||||||||||||||| ||||||||||||    
T  4926216 gtggaggcggaggttgtttgcatgggaggaggag 4926249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 12687552 - 12687685
Alignment:
Q  102 tatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttat 201  Q
    |||||||||||| || |||||| | ||||||| |  ||||| || |||||||| ||||||||| ||||||||||||||  |||||| ||  | || ||||    
T  12687552 tatgagtcagttagggtggggtgaggagggtggg--gcgtggagatggaggcgtaggttgtttacgtgggaggaggagttggtgggggacctcattttat 12687649  T
Q  202 tacttcataatgttcatttgcaggttgatagggatg 237  Q
    ||||||||||||||  |||||||||| ||| |||||    
T  12687650 tacttcataatgttactttgcaggttaatatggatg 12687685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 14436640 - 14436518
Alignment:
Q  144 aggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaat 243  Q
    ||||||||||||||||||| ||||||||||||||||    |||| ||| | || ||| | |||||||||||   ||| |||||||| | ||||| || ||    
T  14436640 aggtggaggcggaggttgtatgcgtgggaggaggagatattgggggaacttattttactgcttcataatgtgtctttacaggttgacaaggatgacagat 14436541  T
Q  244 ggttgtggacattggaatcatct 266  Q
    || | |||||||||||| |||||    
T  14436540 ggctatggacattggaaacatct 14436518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 27104638 - 27104771
Alignment:
Q  102 tatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttat 201  Q
    |||||||||||| || |||||| | ||||||| |  || || || |||||||| | ||| |||||||||||||||| |  |||||| ||  | || ||||    
T  27104638 tatgagtcagttagggtggggtgaggagggtggg--gcttggagatggaggcgtatgttatttgcgtgggaggaggggttggtgggggaccttattttat 27104735  T
Q  202 tacttcataatgttcatttgcaggttgatagggatg 237  Q
    ||||||||||| ||  |||||||||| ||| |||||    
T  27104736 tacttcataattttactttgcaggttaatatggatg 27104771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 27146447 - 27146580
Alignment:
Q  102 tatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttat 201  Q
    |||||||||||| || |||||| | ||||||| |  || || || |||||||| | ||| |||||||||||||||| |  |||||| ||  | || ||||    
T  27146447 tatgagtcagttagggtggggtgaggagggtggg--gcttggagatggaggcgtatgttatttgcgtgggaggaggggttggtgggggaccttattttat 27146544  T
Q  202 tacttcataatgttcatttgcaggttgatagggatg 237  Q
    ||||||||||| ||  |||||||||| ||| |||||    
T  27146545 tacttcataattttactttgcaggttaatatggatg 27146580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 41528794 - 41528907
Alignment:
Q  147 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggt 246  Q
    ||||| ||||| |||||||||||||||||||||  ||||||  |||| || ||||| ||||| ||||||  |||||||||| |||  ||||  |||||||    
T  41528794 tggagacggagtttgtttgcgtgggaggaggagttggtggggtaattcatattattgcttcaaaatgttactttgcaggttaataatgatgataaatggt 41528893  T
Q  247 tgtggacattggaa 260  Q
    ||||||| ||||||    
T  41528894 tgtggacgttggaa 41528907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 289
Target Start/End: Original strand, 40682097 - 40682253
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatag 232  Q
    |||| ||||| | ||||||| ||||||||||||| |||||||||||| ||||||| ||| |    ||||||||||| |||||   |||||||||||| |     
T  40682097 gtgaggcgtggaagtggaggaggaggttgtttgcatgggaggaggagaaggtgggggaactttgtttattacttcaaaatgtaactttgcaggttgaaaa 40682196  T
Q  233 ggatgccaaatggttgtggacattggaatcatctaatgtattctctgttcggagtgc 289  Q
    ||| | || |||| | || |  ||||||  ||||||||| ||||||||||| |||||    
T  40682197 ggaggacatatggctttgaaatttggaaaaatctaatgtgttctctgttcgtagtgc 40682253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 10274887 - 10274946
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattact 205  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||| | | |||||||||    
T  10274887 gtggaggcgaaggttgtttgcgtgggaggaggaggtggtgggggaacttaggttattact 10274946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 417
Target Start/End: Original strand, 34236836 - 34236884
Alignment:
Q  369 aaggttgtgctgtttgcttaacgtttgttccgagacaagctgcctacaa 417  Q
    ||||| ||| ||||||||| ||||||||||||||| |||||||||||||    
T  34236836 aaggtggtgttgtttgcttgacgtttgttccgagataagctgcctacaa 34236884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 6724402 - 6724312
Alignment:
Q  147 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatg 237  Q
    |||||||||||||||||||||||||||||||||  |||||| ||| | |  ||| | |||| ||||||| ||||||||||| ||| |||||    
T  6724402 tggaggcggaggttgtttgcgtgggaggaggagttggtgggggaaattaaattactgcttcttaatgttaatttgcaggttaataaggatg 6724312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 297
Target Start/End: Complemental strand, 27364446 - 27364296
Alignment:
Q  147 tggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaat-taatgttattacttcataatgttcatttgcaggttgatagggatgccaaatgg 245  Q
    ||||| ||||||||||||| ||||||||| | |  | |||| |||| |||| ||||| ||||| |||||  ||||||||||||| |||| ||  | ||||    
T  27364446 tggagacggaggttgtttgtgtgggaggaagggctgttggg-gaatctaatattattgcttcagaatgtgaatttgcaggttgacagggttgatagatgg 27364348  T
Q  246 ttgtggacattggaatcatctaatgtattctctgttcggagtgcatataatt 297  Q
    |||||||| || ||||| || |||| |||  ||||| | |||||||||||||    
T  27364347 ttgtggacgttagaatcttcaaatgcatttactgttagaagtgcatataatt 27364296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 25393018 - 25392928
Alignment:
Q  139 cgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttga 229  Q
    |||| |||||| | |||||||||||||| ||||||||||||  |||||| ||| | | |||| | |||||||||||   ||||||||||||    
T  25393018 cgtggaggtggtgacggaggttgtttgcatgggaggaggagttggtgggggaacttaggttacttcttcataatgtgactttgcaggttga 25392928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 25529503 - 25529549
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggag 179  Q
    |||||||||| ||||||| | ||||||||||||| ||||||||||||    
T  25529503 gtgacgcgtggaggtggatgaggaggttgtttgcatgggaggaggag 25529549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 48611452 - 48611407
Alignment:
Q  133 gtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggagga 178  Q
    |||| ||||| | |||||||||||||||||| ||||||||||||||    
T  48611452 gtgaggcgtggacgtggaggcggaggttgttcgcgtgggaggagga 48611407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 23451535 - 23451575
Alignment:
Q  144 aggtggaggcggaggttgtttgcgtgggaggaggaggaggt 184  Q
    |||||||| || |||||||||| ||||||||||||||||||    
T  23451535 aggtggagacgcaggttgtttgtgtgggaggaggaggaggt 23451575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 260
Target Start/End: Complemental strand, 34704221 - 34704060
Alignment:
Q  97 tttgatatgagtcagttgggttggggtcaagagggtgtgacgcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaat 196  Q
    ||||||||||||||||||||||||||  | ||||||| |  ||||| |||||||| |  |||||||| || | ||||||||||  |||||| ||  | ||    
T  34704221 tttgatatgagtcagttgggttggggggaggagggtggg--gcgtggaggtggagacataggttgttagctttggaggaggagttggtgggggagctcat 34704124  T
Q  197 gttattacttcataatgttcatttgcaggttgatagggatgccaaatggttgtggacattggaa 260  Q
     ||| | ||||| | ||||  |||||||||| | | |||||  ||||| || ||||||||||||    
T  34704123 tttactgcttcaaattgttactttgcaggttaacaaggatgataaatgattatggacattggaa 34704060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 51346919 - 51346805
Alignment:
Q  148 ggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgatagggatgccaaatggtt 247  Q
    |||||||| | |||||||||||||||||||||| |||||| ||| |    ||||||||||| ||| |   |||||||||||||| ||| | ||||||| |    
T  51346919 ggaggcggggattgtttgcgtgggaggaggaggcggtgggggaactctgtttattacttcaaaatatgactttgcaggttgataaggaggacaaatggct 51346820  T
Q  248 gtggacattggaatc 262  Q
     ||||  ||||||||    
T  51346819 ttggaatttggaatc 51346805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 25845115 - 25845208
Alignment:
Q  138 gcgtgaaggtggaggcggaggttgtttgcgtgggaggaggaggaggtgggagaattaatgttattacttcataatgttcatttgcaggttgata 231  Q
    ||||| || |||||| || |||||||||| ||||||||||||  |||||  ||| | |  |||||||||||||||||   ||||||||||||||    
T  25845115 gcgtggagttggaggtggcggttgtttgcttgggaggaggagttggtggacgaacttagattattacttcataatgtcactttgcaggttgata 25845208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 35503340 - 35503381
Alignment:
Q  146 gtggaggcggaggttgtttgcgtgggaggaggaggaggtggg 187  Q
    |||||| ||||| ||||||||||||||||||||| |||||||    
T  35503340 gtggagacggagattgtttgcgtgggaggaggagcaggtggg 35503381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University