View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14358_low_3 (Length: 452)

Name: NF14358_low_3
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14358_low_3
NF14358_low_3
[»] chr5 (3 HSPs)
chr5 (50-452)||(6609602-6610004)
chr5 (183-428)||(6602220-6602465)
chr5 (50-93)||(6602100-6602143)


Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 50 - 452
Target Start/End: Original strand, 6609602 - 6610004
Alignment:
Q  50 agcacagatccatcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatctaacggtatattaa 149  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6609602 agcacagatccttcacatccctatgtaacacaaaaatgaaataacaaatcaacacataatattattaaagaataattttaacgatccaacggtatattaa 6609701  T
Q  150 ttgacagtgtaaacaatcatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca 249  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6609702 ttgacagtgtaaaaaataatggaaatgaagagacttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtca 6609801  T
Q  250 ttagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtggag 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||    
T  6609802 ttagctatagctgacaagatattatttttaacaattctgttcaggtttggacaagttctaatgtagaagttgtaatagagttgagagcacacatttggag 6609901  T
Q  350 taagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatttgt 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6609902 taagaaacacaagacaaaacatgaaaacaaaaacatgtttgttagagacacactccatgagttgaaactatgatgacaacaaagggaagttaaaatttgt 6610001  T
Q  450 tga 452  Q
    |||    
T  6610002 tga 6610004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 183 - 428
Target Start/End: Original strand, 6602220 - 6602465
Alignment:
Q  183 cttaattacattgacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatccttgagtcattagctatagctgacaagatattatttttaaca 282  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||||    
T  6602220 cttaattacattaacaaaacaatcatggaaatgaaggcgcaagagagaagcagcaatcctagaatcattagctatagctgacaagatattgtctttaaca 6602319  T
Q  283 attctgttcaggtttggacaagttctaatgtagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaacaaaaa 382  Q
    ||| ||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6602320 attttgttcagatttggacaagttctgttatagaaattgtaatatagttgagagcacacaagtggagtaagaaacacaagacaaaacatgaaaataaaaa 6602419  T
Q  383 catgtttgttagagacacactccatgagttgaaactatgatgacaa 428  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||    
T  6602420 catgtttgttagagacacactccatgagctgaaactatgttgacaa 6602465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 6602100 - 6602143
Alignment:
Q  50 agcacagatccatcacatccctatgtaacacaaaaatgaaataa 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6602100 agcacagatccatcacatccctatgtaacacaaaaatgaaataa 6602143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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