View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14358_low_4 (Length: 420)
Name: NF14358_low_4
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14358_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 23204614 - 23204219
Alignment:
| Q |
15 |
gaaactaacgcagaattagtcatgctacttaaaagtaaagaatatttttgtatggaaagacaatgttagttaattacttagattttgtaagacgttagtg |
114 |
Q |
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| T |
23204614 |
gaaactaacccaatatgagtcatgctacctaaaagtaaagaatatttttgtatggaaagacaatgttagttaattacttggattttgtaatatgttagtg |
23204515 |
T |
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| Q |
115 |
gagactggagagtaggatttaaacactagctcatttatcctacttaaattgtatccactatgattttgtaccaaaatgtgatgttttggtatccatacat |
214 |
Q |
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| T |
23204514 |
gaga-------gtaggatttaaacactagctcatttattctacttaaattgtatccactatgattttgtaccaaaatgtgatgttttggtatccatacat |
23204422 |
T |
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| Q |
215 |
gatatgtctgtatactgggttgaatcccctccttcaagtttgcccttaaaaaatataaaaggtatttccttgtgttgaatcatgccatgatatctcgcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
23204421 |
gatatgtctgtatactgggttgaatcccctccttcaagtttgcccttaaaaaatataaaagatatttccttgtgttgaatcatgccatgatatctcacaa |
23204322 |
T |
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| Q |
315 |
gtactgaagtgtaaggcaaataggttaaggtga-nnnnnnnngaagaagaataggttaagatgattagtagtggtcaaaagacaatggccgatttgcctc |
413 |
Q |
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||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
23204321 |
gtacttaagtgtaaggaaaataggttaaggtgatttttttttgaagaagaataggttaagatgattagtagtggtcaaaaggcaatgattgatttgcctc |
23204222 |
T |
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