View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14358_low_5 (Length: 417)

Name: NF14358_low_5
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14358_low_5
NF14358_low_5
[»] chr3 (2 HSPs)
chr3 (13-417)||(33319216-33319620)
chr3 (52-417)||(33344378-33344742)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 33319216 - 33319620
Alignment:
Q  13 taaaatgtaaatccttgatgtaatttggggcggagggagtagataataacaagtgtttatttaccttgcttaaaagggtggcaagaccttgagatagagc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33319216 taaaatgtaaatccttgatgtaatttggggcggagggagtagataataacaagtgtttatttaccttacttaaaagggtggcaagaccttgagatagagc 33319315  T
Q  113 ttgtaaatctagatccgagtcaccaatattttccaactgaagcaacaatctttggatgcgcaattcctttagtttatcctcgtaatttgagggatcattc 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33319316 ttgtaaatctagatccgagtcaccaatatttttcaactgaagcaacaatctttggatgcgcaattcctttagtttatcctcgtaatttgagggatcattc 33319415  T
Q  213 ctccatctgaagaaggcttcatcgtccaaccaagcatcttcactacctttggagatatcagaattcatataccattctttgagcaagttcatggcagata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33319416 ctccatctgaagaaggcttcatcgtccaaccaagcatcttcactacctttggagatatcagaattcatataccattctttgagcaagttcatggcagata 33319515  T
Q  313 catgtgtcaattggtcaccagcagcatctctcacaatgttgatcagtgagtgctcaccgattctcctgtgcagtctccgatagaagaaagaacgtgagtc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33319516 catgtgtcaattggtcaccagcagcatctctcacaatgttgatcagtgagtgctcaccgattctcctgtgcagtctccgatagaagaaagaacgtgagtc 33319615  T
Q  413 acgcc 417  Q
    |||||    
T  33319616 acgcc 33319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 52 - 417
Target Start/End: Original strand, 33344378 - 33344742
Alignment:
Q  52 tagataataacaagtgtttatttaccttgcttaaaagggtggcaagaccttgagatagagcttgtaaatctagatccgagtcaccaatattttccaactg 151  Q
    ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||  ||||||    
T  33344378 tagataataacaaatgttt-tttaccttgcttaaaagggcggcaagaccttgaggtagagcttgtaaatctagagccgagtcgccaatatttgtcaactg 33344476  T
Q  152 aagcaacaatctttggatgcgcaattcctttagtttatcctcgtaatttgagggatcattcctccatctgaagaaggcttcatcgtccaaccaagcatct 251  Q
    |||||||| ||| |||| |||||||||||||||||||||||| |||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  33344477 aagcaacagtctctggacgcgcaattcctttagtttatcctcataatatgatgtatcatccctccatctgaagaaggcttcatcgtccaaccaagcatct 33344576  T
Q  252 tcactacctttggagatatcagaattcatataccattctttgagcaagttcatggcagatacatgtgtcaattggtcaccagcagcatctctcacaatgt 351  Q
    ||||| ||||||  |||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||    
T  33344577 tcactgcctttgacgatatcagaattcagataccattctttgagcaagttcatggcagaaacatatgacaattggtcaccagcagcatctctcacactgt 33344676  T
Q  352 tgatcagtgagtgctcaccgattctcctgtgcagtctccgatagaagaaagaacgtgagtcacgcc 417  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||    
T  33344677 tgatcagtgagtgctcaccgattctcctgtgcagtcgccgatagaagacagaacgcgagttacgcc 33344742  T

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