View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14358_low_6 (Length: 390)
Name: NF14358_low_6
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14358_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 18106056 - 18106421
Alignment:
| Q |
14 |
gaagtcatttgaatgcttgataatcct-ataaaaattccaaaactaaaccannnnnnnnattctgtttgttttgtggatcgagtattatctggaccatca |
112 |
Q |
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| T |
18106056 |
gaagtcatttgaatgcttgataatcctcataaaaattccaaaactaaaccattttttt-attctgtttgttttgtggatcgagtattatctggaccatca |
18106154 |
T |
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| Q |
113 |
tcctagcgttgtttctcaccaatcataatttctatttttcggtcaattcataattcaactggaactctaacataaaaataagttctaacacttta----- |
207 |
Q |
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| T |
18106155 |
tcctagcgttgtttctcaccaatcataatttctatttttcggtcaattcataattcaactggagctctaacataaaaataagttctaacactttaacttt |
18106254 |
T |
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| Q |
208 |
-gtgtcaaacaaatgaggttctaacacaaaaaatactacatgtaatgctagctggttatgaaacaattgcaatatcaaccatgcacaagatgactctaaa |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18106255 |
agtgttaaacaaatgaggttctaacacaaaaaatactacatgtaatgctagctggttatgaaacaattgcaatatcaaccatgcacaagatgactcaaaa |
18106354 |
T |
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| Q |
307 |
aatatttatgtcattgccactttgtgaaggagtaagaccttccgcagagcatatcaccaatccctttg |
374 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18106355 |
aata-ttacgtcattgccactttgtgaaggagtaagaccttccgcagagcatatcaccaatccctttg |
18106421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 77 - 374
Target Start/End: Original strand, 18139775 - 18140057
Alignment:
| Q |
77 |
gtttgttttgtggatcgagtattatctggaccatcatcctagcgttgtttctcaccaatcataatttctatttt-tcggtcaattcataattcaactgga |
175 |
Q |
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| T |
18139775 |
gtttgttttgtggatcaagtattttctggagcatcatgctaacgttgtttctcaccaatcataatttctattttatcagtcaattcataattcaactgca |
18139874 |
T |
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| Q |
176 |
actctaacataaaaataagttctaacactttagtgtcaaacaaatgaggttctaacacaaaaaatactacatgtaatgctagctggttatgaaacaattg |
275 |
Q |
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||||| ||||||||| ||||||||| || |||| | ||| |||| ||||||||| |||||||||||||||||| |||| ||||| |
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| T |
18139875 |
tctctagcataaaaat--gttctaacaatt---------------gaggctgtaatacaagaaatactacttgtaatgctagctggttacgaaataattg |
18139957 |
T |
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| Q |
276 |
caatatcaaccatgcacaagatgactctaaaaata-tttatgtcattgccactttgtgaaggagtaagaccttccgcagagcatatcaccaatccctttg |
374 |
Q |
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| T |
18139958 |
caatatcaaccatgcacaagatgactctgaaaatattttttggtattgccaatttgtgaaggaataagaccttcctcagagcatatcaccaatccctttg |
18140057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 4195002 - 4194966
Alignment:
| Q |
260 |
ggttatgaaacaattgcaatatcaaccatgcacaaga |
296 |
Q |
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| T |
4195002 |
ggttatgaaacaattgcaatatcaaccatgtacaaga |
4194966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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