View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14358_low_7 (Length: 357)
Name: NF14358_low_7
Description: NF14358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14358_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 54210493 - 54210817
Alignment:
| Q |
16 |
atatatagccacttattgttggttggattaagggttttccatttaaccataacaacctaaaaaccgtaacattgtgagacatgcacacacgtcaattttt |
115 |
Q |
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| T |
54210493 |
atatatagccacttattgttggttggattaagggttttccatttaaccataacaacctaaaaaccgtaacattgtgagacatgcacacacgtcaattttt |
54210592 |
T |
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| Q |
116 |
agggaaaccagaacaaacagtttaagtggaaaactgaaatacacgg-cagacgaaattagatacaataacttggaccaatcactattggtatacaaccac |
214 |
Q |
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| T |
54210593 |
agggaaaccagaacaaacagtttaagtggaaaactgaaatacacggccagacgaaattagatacaataacttggaccaatcactattggtatacaaccac |
54210692 |
T |
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| Q |
215 |
agggaggtgacattttttattaaattnnnnnnnnncatgcaatgcacaagaaagcattgatttgttgactacatgtgccgcacaaaggcaacaatgaaac |
314 |
Q |
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| T |
54210693 |
agggaggtgacattttttattaaattaaaaaaaaacatgcaatgcacaagaaagcattgatttgttgactacatgtgccgcacaaaggcaacaatgaaac |
54210792 |
T |
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| Q |
315 |
cttacaatattactatcacactatg |
339 |
Q |
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| T |
54210793 |
cttacaatattactatcacactatg |
54210817 |
T |
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