View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_11 (Length: 415)
Name: NF14359_high_11
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 33 - 400
Target Start/End: Complemental strand, 28276922 - 28276543
Alignment:
| Q |
33 |
actttcaccttattgcttttgtttagaaagataattgggtaaataatttaactaaccactttttcattaagtgttcattacataagaattatatataaaa |
132 |
Q |
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| T |
28276922 |
acttttaccttattgcttttgtttagaaagataattgggtaaataatttaactaac-actttttcattaagtgttcattacataagaattatatataaaa |
28276824 |
T |
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| Q |
133 |
-gtacatttatatctataataaggaggcataaaaaacttatacataatatttggaaccctagactttttgcatctttgaaattcacatgacaatcaaaca |
231 |
Q |
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| T |
28276823 |
agtacatttatatctataata-ggaggcataaaaaacttatacataatatttggaaccccagactttttgtatctttgaaattcacatgacaatcaaaca |
28276725 |
T |
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| Q |
232 |
attttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttctttgaaatgctatat-attcataa-------------cctt |
317 |
Q |
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| T |
28276724 |
tttttctaatgagcttgttcgtgacttcgaaatgctataaatgaatcggagagctcttctttgaaatgctatataactaattaggtatgacctgtccctt |
28276625 |
T |
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| Q |
318 |
gatcatatacatatgtctaaaataccaattggtaatatacaaaaggaatgattgtgtgtgtccactggtctaatcaagttgat |
400 |
Q |
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| T |
28276624 |
gatcatatacatatgtctaaaataccaatt-gtaatatacaaaaggaatgattgtgtgtgtccactggtctaatcaacttgat |
28276543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 28296365 - 28296549
Alignment:
| Q |
33 |
actttcaccttattgcttttgtttagaaagata--attgggtaaataatttaactaaccactttttcattaagtgttcattacataagaattatatataa |
130 |
Q |
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| T |
28296365 |
actttcaccttattgcttttgtttagaaagatataattggataaataatttaactaaccactttttcattaagtgttcattacataagagttatatataa |
28296464 |
T |
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| Q |
131 |
aagtacatttatatctataataaggaggcataaaaaacttatacataatatttggaaccctagactttttgcatctttgaaattc |
215 |
Q |
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| T |
28296465 |
aagtacatttatatctataataaggaggcatagaaaacttatacataatatttggaaccccacactttttgtatctttgaaattc |
28296549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 28297408 - 28297491
Alignment:
| Q |
207 |
ttgaaattcacatgacaatcaaacaattttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
290 |
Q |
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| T |
28297408 |
ttgaaattcacatgacaatcaaacatttttctaatgagcttgttcgtgactttgaaatgctataaatgaataggagagctcttc |
28297491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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