View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14359_high_17 (Length: 368)
Name: NF14359_high_17
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 27428664 - 27428339
Alignment:
| Q |
17 |
aaaaaggttaagaaaattatgcttgcttgagggtggttttgagagctgggagaacaaggtcatgttgagcatcagtacaccataacttggaagtaatgaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428664 |
aaaaaggttaagaaaattatgcttgcttgagggtggttttgagagctgggagaacaaggtcatgttgagcatcagtacaccataacttggaagtaatgaa |
27428565 |
T |
|
| Q |
117 |
gagttcatcgcgatttttaacgaggcctagctctaaagcctttgatacagcttggcctagaggttcttcagtaccataaagagcagcagtatcaaaatgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428564 |
gagttcatcgcgatttttaacgaggcctagctctaaagcctttgacacagcttggcctagaggttcttcagtaccataaagagcagcagtatcaaaatgt |
27428465 |
T |
|
| Q |
217 |
ctgtagccaatgtcaatagcatcaagcataatttgttgaggaggagttgttcctgttccaaagcctatcattggcatctttttccctgaatttagtacca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428464 |
ctgtagccaatgtcaatagcatcaagcataatttgttgaggaggagttgttcctgttccaaagcctatcattggcatctttttccctgaatttagtacca |
27428365 |
T |
|
| Q |
317 |
cctctggaactttctttgtttccatc |
342 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27428364 |
cctctggaactttctttgtttccatc |
27428339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 27440198 - 27439974
Alignment:
| Q |
17 |
aaaaaggttaagaaaattatgcttgcttgagggtggttttgagagctgggagaacaaggtcatgttgagcatcagtacaccataacttggaagtaatgaa |
116 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27440198 |
aaaaaggttaagagaattatgcttgcttgagagtggatttgagagctgggagaacaaggtcatggtgagcatcagtacaccataacttggaagtaacgaa |
27440099 |
T |
|
| Q |
117 |
gagttcatcgcgatttttaacgaggcctagctctaaagcctttgatacagcttggcctagaggttcttcagtaccataaagagcagcagtatcaaaatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||| |
|
|
| T |
27440098 |
cagttcatcgcgatttttaacgaggcctagctctaaagcttttgacacagcttggcctagaggttcttcagtattatagatagaagcagtatcaaaatgc |
27439999 |
T |
|
| Q |
217 |
ctgtagccaatgtcaatagcatcaa |
241 |
Q |
| |
|
|||||||| || | ||| ||||||| |
|
|
| T |
27439998 |
ctgtagcctattttaatggcatcaa |
27439974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 27443118 - 27442900
Alignment:
| Q |
23 |
gttaagaaaattatgcttgcttgagggtggttttgagagctgggagaacaaggtcatgttgagcatcagtacaccataacttggaagtaatgaagagttc |
122 |
Q |
| |
|
||||||| || ||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
27443118 |
gttaagagaaatatgcttgcttgatggtagttttgagagatgggagaacaaggtcatggtgagcatcagtacaccataacttggaagtaacgaacagttc |
27443019 |
T |
|
| Q |
123 |
atcgcgatttttaacgaggcctagctctaaagcctttgatacagcttggcctagaggttcttcagtaccataaagagcagcagtatcaaaatgtctgtag |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||| | || ||||||||||||||| |||||| |
|
|
| T |
27443018 |
atcgcgatttttaacgaggcctagctctaaagcttttgacacagcttggcctagaggttcttcagtattatagacagaagcagtatcaaaatgcctgtag |
27442919 |
T |
|
| Q |
223 |
ccaatgtcaatagcatcaa |
241 |
Q |
| |
|
|| || ||||| ||||||| |
|
|
| T |
27442918 |
cctatttcaatggcatcaa |
27442900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 27442853 - 27442781
Alignment:
| Q |
270 |
tgttccaaagcctatcattggcatctttttccctgaatttagtaccacctctggaactttctttgtttccatc |
342 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
27442853 |
tgttccaaaacctatcattggcatctttttccctgaatttagtatcacctctggaactttctttgcttccatc |
27442781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 27439917 - 27439855
Alignment:
| Q |
280 |
cctatcattggcatctttttccctgaatttagtaccacctctggaactttctttgtttccatc |
342 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
27439917 |
cctatcattggcatatttttccctgaatttagtatcacctctggaactttgtttatttccatc |
27439855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 26933439 - 26933586
Alignment:
| Q |
35 |
atgcttgcttgagggtggttttgagagctgggagaacaaggtcatgttgagcatcagtacaccataacttggaagtaatgaagagttcatcgcgattttt |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||| | ||| ||||||||| |
|
|
| T |
26933439 |
atgcttgcttgagggtggttttgagagctttgagaacaaggtcatggtgagcatcagtgcaccatagcttggaagtaatgaaaaccccattgcgattttt |
26933538 |
T |
|
| Q |
135 |
aacgaggcctagctctaaagcctttgatacagcttggcctagaggttc |
182 |
Q |
| |
|
| || || ||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
26933539 |
tataagtccgagctctagagcttttgacacagcttggcctagaggttc |
26933586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University