View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_high_2 (Length: 551)

Name: NF14359_high_2
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_high_2
NF14359_high_2
[»] chr6 (23 HSPs)
chr6 (233-551)||(26550177-26550495)
chr6 (35-131)||(26549976-26550074)
chr6 (233-311)||(26562502-26562580)
chr6 (233-311)||(26557233-26557311)
chr6 (505-545)||(31812239-31812279)
chr6 (369-460)||(24626165-24626255)
chr6 (497-544)||(26280527-26280574)
chr6 (369-435)||(30926432-30926498)
chr6 (380-460)||(6538387-6538466)
chr6 (498-542)||(34620809-34620853)
chr6 (498-542)||(34748246-34748290)
chr6 (497-544)||(6896048-6896095)
chr6 (471-537)||(29240575-29240642)
chr6 (503-542)||(34063260-34063299)
chr6 (380-434)||(19411604-19411658)
chr6 (517-551)||(26550514-26550548)
chr6 (517-551)||(26550567-26550601)
chr6 (517-551)||(26550620-26550654)
chr6 (509-543)||(31305967-31306001)
chr6 (509-543)||(33136600-33136634)
chr6 (511-544)||(2002581-2002614)
chr6 (376-432)||(35070747-35070804)
chr6 (498-542)||(10400814-10400858)
[»] chr1 (22 HSPs)
chr1 (248-312)||(50937462-50937526)
chr1 (360-460)||(37473269-37473368)
chr1 (360-459)||(17830025-17830123)
chr1 (371-460)||(14331659-14331747)
chr1 (378-460)||(38247324-38247404)
chr1 (503-544)||(36780233-36780274)
chr1 (503-543)||(15478118-15478158)
chr1 (498-542)||(20720740-20720783)
chr1 (503-543)||(24587837-24587877)
chr1 (359-411)||(27976513-27976565)
chr1 (488-542)||(8381897-8381951)
chr1 (365-411)||(24552446-24552492)
chr1 (376-433)||(5741558-5741615)
chr1 (511-544)||(47322022-47322055)
chr1 (388-461)||(47498962-47499034)
chr1 (388-460)||(5894282-5894353)
chr1 (503-543)||(6041620-6041660)
chr1 (498-542)||(9939846-9939890)
chr1 (424-460)||(10280521-10280557)
chr1 (510-542)||(23052399-23052431)
chr1 (503-543)||(37131862-37131902)
chr1 (510-542)||(49079332-49079364)
[»] chr5 (16 HSPs)
chr5 (364-460)||(3735596-3735691)
chr5 (485-543)||(3043121-3043179)
chr5 (371-439)||(7319123-7319191)
chr5 (503-543)||(39097192-39097232)
chr5 (376-459)||(32372495-32372577)
chr5 (503-543)||(16293999-16294039)
chr5 (488-543)||(10898635-10898690)
chr5 (496-539)||(10957382-10957425)
chr5 (514-544)||(29922833-29922863)
chr5 (370-459)||(26005349-26005437)
chr5 (424-460)||(6593179-6593215)
chr5 (498-542)||(12404997-12405041)
chr5 (388-460)||(28776855-28776926)
chr5 (396-460)||(34590355-34590419)
chr5 (370-410)||(40439066-40439106)
chr5 (498-538)||(42857811-42857851)
[»] chr4 (17 HSPs)
chr4 (376-459)||(50681206-50681288)
chr4 (360-434)||(19494809-19494883)
chr4 (498-544)||(49138951-49138997)
chr4 (376-436)||(41336654-41336714)
chr4 (360-411)||(31851372-31851423)
chr4 (376-411)||(43505874-43505909)
chr4 (497-540)||(50358134-50358177)
chr4 (369-411)||(22030122-22030164)
chr4 (503-545)||(31013848-31013890)
chr4 (426-460)||(39178392-39178426)
chr4 (498-543)||(16551880-16551925)
chr4 (498-543)||(27967953-27967998)
chr4 (498-543)||(35064986-35065031)
chr4 (498-543)||(45329769-45329814)
chr4 (378-462)||(17204006-17204089)
chr4 (388-460)||(30066885-30066957)
chr4 (388-464)||(44863081-44863156)
[»] chr2 (14 HSPs)
chr2 (376-460)||(41407171-41407254)
chr2 (370-460)||(11863801-11863890)
chr2 (511-544)||(15928550-15928583)
chr2 (503-540)||(37420317-37420354)
chr2 (360-436)||(31561854-31561930)
chr2 (498-542)||(40582672-40582716)
chr2 (503-542)||(7629790-7629829)
chr2 (369-432)||(41241242-41241305)
chr2 (376-411)||(42659268-42659303)
chr2 (388-434)||(32364843-32364889)
chr2 (498-540)||(43717265-43717307)
chr2 (391-452)||(9833042-9833103)
chr2 (388-460)||(19608744-19608815)
chr2 (503-539)||(37561635-37561671)
[»] chr8 (12 HSPs)
chr8 (376-459)||(14956412-14956494)
chr8 (363-460)||(1058178-1058274)
chr8 (364-409)||(42043450-42043495)
chr8 (364-411)||(12976131-12976178)
chr8 (503-540)||(8252725-8252762)
chr8 (511-544)||(13384770-13384803)
chr8 (498-543)||(42455835-42455880)
chr8 (256-309)||(45508256-45508309)
chr8 (420-460)||(4389823-4389863)
chr8 (369-401)||(25930664-25930696)
chr8 (388-460)||(26215376-26215447)
chr8 (498-542)||(39648263-39648307)
[»] chr3 (21 HSPs)
chr3 (364-459)||(30956731-30956825)
chr3 (364-459)||(30972543-30972637)
chr3 (506-542)||(3776470-3776506)
chr3 (376-440)||(5331183-5331247)
chr3 (488-543)||(52925728-52925783)
chr3 (466-539)||(3845233-3845307)
chr3 (369-411)||(53789571-53789613)
chr3 (376-440)||(29520595-29520659)
chr3 (388-460)||(30574031-30574103)
chr3 (378-460)||(31365391-31365472)
chr3 (369-459)||(35959566-35959655)
chr3 (509-539)||(39256609-39256639)
chr3 (398-460)||(47132247-47132308)
chr3 (498-543)||(1290704-1290749)
chr3 (509-542)||(1441499-1441532)
chr3 (498-543)||(7262821-7262866)
chr3 (360-401)||(20880405-20880446)
chr3 (376-453)||(28795949-28796025)
chr3 (371-439)||(2719359-2719427)
chr3 (498-542)||(7717491-7717535)
chr3 (511-543)||(44958723-44958755)
[»] chr7 (11 HSPs)
chr7 (376-460)||(21568745-21568828)
chr7 (498-542)||(45004908-45004952)
chr7 (376-435)||(45806594-45806653)
chr7 (509-543)||(12306668-12306702)
chr7 (364-411)||(4970893-4970940)
chr7 (497-544)||(28725168-28725215)
chr7 (380-434)||(20428362-20428416)
chr7 (388-452)||(7612346-7612410)
chr7 (498-542)||(38123766-38123810)
chr7 (503-543)||(41841091-41841131)
chr7 (364-408)||(48140137-48140181)
[»] scaffold0168 (1 HSPs)
scaffold0168 (498-544)||(31749-31795)
[»] scaffold0012 (1 HSPs)
scaffold0012 (376-411)||(207698-207733)
[»] scaffold0018 (1 HSPs)
scaffold0018 (376-460)||(157977-158060)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 233 - 551
Target Start/End: Original strand, 26550177 - 26550495
Alignment:
Q  233 tggctacactaattttacctccaattcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggtaccataattttctcgtaacttgt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||    
T  26550177 tggctacactaattttacctccaattcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggtaccatatttctctcctaacttgt 26550276  T
Q  333 actgatgatgctgcatatatgcttttaatcatttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataag 432  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  26550277 actgatgatgttgcatatatgcttttaatcatttgttatagagatagcttatgtaagcttatacataagtgcttatcattagaagttattgtgctataag 26550376  T
Q  433 ctgtaaaatatgttgtttatccaaacagtctgctggtatatgtttgattccattatggaggaataaaaaatgattatagaggtgtagaattgattttgac 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550377 ctgtaaaatatgttgtttatccaaacagtctgctggtatatgtttgattccattatggaggaataaaaaatgattatagaggtgtagaattgattttgac 26550476  T
Q  533 atgtttggttgtactcaac 551  Q
    |||||||||||||||||||    
T  26550477 atgtttggttgtactcaac 26550495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 26549976 - 26550074
Alignment:
Q  35 tataataattgtatgttgtccaaatggtacgtttagttg-cagatactcgttttctatctattggttgaacaattattgca-ttcatacatcattgtca 131  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||| |||||||||||||||||    
T  26549976 tataataattgcatgttgtccaaatggtacgtttagttgacagatactcattttctttccattggttgaacaattattgcatttcatacatcattgtca 26550074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 26562502 - 26562580
Alignment:
Q  233 tggctacactaattttacctccaattcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggtac 311  Q
    ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26562502 tggctacacttgttgtacctccaattccaccttctcctagagatgatgccatgcaactttaccgtgctttcaaaggtac 26562580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 26557233 - 26557311
Alignment:
Q  233 tggctacactaattttacctccaattcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggtac 311  Q
    ||||||||||  || ||||||||  |||||||||||||  ||| ||||| |||||||||||||||||||| ||||||||    
T  26557233 tggctacacttgttgtacctccagctcctccttctcctctagacgatgcgatgcaactttaccgtgctttcaaaggtac 26557311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 31812239 - 31812279
Alignment:
Q  505 attatagaggtgtagaattgattttgacatgtttggttgta 545  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  31812239 attatagaggtctagaattgattttgacatgtttggttgta 31812279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 24626255 - 24626165
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||| ||||||||||||||||||||||||||   | ||||| | |||   || ||||||||||||| ||||| |||||||||||||||||    
T  24626255 tatagaaatagcttatgtaagcttatacataagcaatcatcatgataagcatttgtgctataagctgt-aaataagttgtttatccaaacag 24626165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 26280527 - 26280574
Alignment:
Q  497 aaaaaatgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||||    
T  26280527 aaaaaatgattttaaaggtgtagaattgattttgacatgtttgattgt 26280574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 30926498 - 30926432
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctg 435  Q
    |||||| ||||||||||||||||||||| ||| |||||||||| | |||  ||| ||||||||||||    
T  30926498 tatagaaatagcttatgtaagcttatacttaattgcttatcatgataagcccttgtgctataagctg 30926432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 460
Target Start/End: Complemental strand, 6538466 - 6538387
Alignment:
Q  380 cttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||| ||||||||||||||| ||||||||| | |||| ||| ||||||||||||  ||||| | | |||||||||||||    
T  6538466 cttatgcaagcttatacataagcgcttatcattataagtgcttgtgctataagctg-caaataagctatttatccaaacag 6538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 34620809 - 34620853
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  34620809 aaaattgattctaaaggtgtagaattgattttgacatgtttggtt 34620853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 34748246 - 34748290
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| || |||||||||||||||||||||||||||||||    
T  34748246 aaaattgattctaaaggtgtagaattgattttgacatgtttggtt 34748290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 6896095 - 6896048
Alignment:
Q  497 aaaaaatgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||||||| | ||| ||||||||||||| ||||||||||||||||    
T  6896095 aaaaaatgattctggagatgtagaattgattatgacatgtttggttgt 6896048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 537
Target Start/End: Complemental strand, 29240642 - 29240575
Alignment:
Q  471 tatgtttgattcca-ttatggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtt 537  Q
    |||||||| ||||| || ||| ||||| |||| ||||| |||||||||| ||||||||||||||||||    
T  29240642 tatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgtt 29240575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 542
Target Start/End: Original strand, 34063260 - 34063299
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  34063260 tgattctacaggtgtagaattgattttgacatgtttggtt 34063299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 434
Target Start/End: Original strand, 19411604 - 19411658
Alignment:
Q  380 cttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagct 434  Q
    ||||||||| |||||||||||| |||||| || ||||||| || |||||||||||    
T  19411604 cttatgtaaccttatacataagagcttattatgagaagtttttgtgctataagct 19411658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 26550514 - 26550548
Alignment:
Q  517 tagaattgattttgacatgtttggttgtactcaac 551  Q
    |||||||||| ||||||||||||||||||||||||    
T  26550514 tagaattgatcttgacatgtttggttgtactcaac 26550548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 26550567 - 26550601
Alignment:
Q  517 tagaattgattttgacatgtttggttgtactcaac 551  Q
    |||||||||| ||||||||||||||||||||||||    
T  26550567 tagaattgatcttgacatgtttggttgtactcaac 26550601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 551
Target Start/End: Original strand, 26550620 - 26550654
Alignment:
Q  517 tagaattgattttgacatgtttggttgtactcaac 551  Q
    |||||||||| ||||||||||||||||||||||||    
T  26550620 tagaattgatcttgacatgtttggttgtactcaac 26550654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 543
Target Start/End: Complemental strand, 31306001 - 31305967
Alignment:
Q  509 tagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||||||||||||||||||||||||||||    
T  31306001 tagatgtgtagaattgattttgacatgtttggttg 31305967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 543
Target Start/End: Complemental strand, 33136634 - 33136600
Alignment:
Q  509 tagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||||||||| ||||||||||||||||||||||||    
T  33136634 tagaggtgtataattgattttgacatgtttggttg 33136600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 2002614 - 2002581
Alignment:
Q  511 gaggtgtagaattgattttgacatgtttggttgt 544  Q
    |||| |||||||||||||||||||||||||||||    
T  2002614 gaggcgtagaattgattttgacatgtttggttgt 2002581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 432
Target Start/End: Original strand, 35070747 - 35070804
Alignment:
Q  376 atagcttatgtaagcttata-cataagtgcttatcatcagaagttcttctgctataag 432  Q
    |||||||||||||||||||| ||| |||||||||||| | |||| ||| |||||||||    
T  35070747 atagcttatgtaagcttatagcattagtgcttatcatgacaagtgcttgtgctataag 35070804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 10400858 - 10400814
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| |||||||||| |||||||||||| ||||||||||    
T  10400858 aaaattgattctagaggtgtataattgattttgatatgtttggtt 10400814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 50937526 - 50937462
Alignment:
Q  248 tacctccaattcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggtacc 312  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  50937526 tacctccatttcccccttctcctagagatgatgcgatgcaactttaccgtgctttcaaaggtacc 50937462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 460
Target Start/End: Complemental strand, 37473368 - 37473269
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| |||| | |||  ||| ||| ||||||||  ||||| ||||||||||||||||    
T  37473368 atcatttgctataaaaatagcttatgtaagcttatacataagtgcttgtcatgataagaacttgtgcaataagctg-caaataagttgtttatccaaaca 37473270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 360 - 459
Target Start/End: Complemental strand, 17830123 - 17830025
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||||||| |||| | ||||||||||||| | |||| ||||||||||||||| | |||| ||| || ||||||||| || ||||||||||||||||||||    
T  17830123 atcatttgctataaaaatagcttatgtaatcgtatagataagtgcttatcatgataagtgcttgtgatataagctg-aagatatgttgtttatccaaaca 17830025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 460
Target Start/End: Complemental strand, 14331747 - 14331659
Alignment:
Q  371 tagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||||  ||| ||||||||||| | ||||| | |||||||| ||||||    
T  14331747 tagaaatagcttatgttagcttatacataagtgcttatcatgagaagcgcttgtgctataagct-tcaaataagctgtttatctaaacag 14331659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 460
Target Start/End: Complemental strand, 38247404 - 38247324
Alignment:
Q  378 agcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||||||| ||||||||||||||||| |||||| | |||| ||| ||||||||||||  ||||| | |||||||||||||||    
T  38247404 agcttatgtgagcttatacataagtgcatatcatgataagtgcttgtgctataagctg-caaata-gctgtttatccaaacag 38247324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 544
Target Start/End: Complemental strand, 36780274 - 36780233
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  36780274 tgattatggaggtgtagaattgattttgatatgtttggttgt 36780233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 543
Target Start/End: Complemental strand, 15478158 - 15478118
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  15478158 tgattttagcggtgtagaattgattttgacatgtttggttg 15478118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 20720740 - 20720783
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  20720740 aaaattgattata-aggtgtagaattgattttgacatgtttggtt 20720783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 24587837 - 24587877
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  24587837 tgattctagaggtgtagaattgattgtgacatgtttggttg 24587877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 27976565 - 27976513
Alignment:
Q  359 aatcatttgttatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    ||||||||| |||| | ||||||||||||||||||||||||||  ||||||||    
T  27976565 aatcatttgctataaaaatagcttatgtaagcttatacataaggacttatcat 27976513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 542
Target Start/End: Original strand, 8381897 - 8381951
Alignment:
Q  488 tggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    ||||||| | |||| ||||| ||||||| || |||||||||||||||||||||||    
T  8381897 tggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttggtt 8381951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 411
Target Start/End: Original strand, 24552446 - 24552492
Alignment:
Q  365 ttgttatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    ||||||| || ||||||||||||||||| |||||||| |||||||||    
T  24552446 ttgttattgaaatagcttatgtaagcttgtacataagcgcttatcat 24552492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 433
Target Start/End: Complemental strand, 5741615 - 5741558
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagc 433  Q
    ||||||||||||| |||||||||||| ||||||||| | | || ||| ||||||||||    
T  5741615 atagcttatgtaaacttatacataagcgcttatcatgataggtgcttgtgctataagc 5741558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 47322055 - 47322022
Alignment:
Q  511 gaggtgtagaattgattttgacatgtttggttgt 544  Q
    |||||||||||||||||||||||||||| |||||    
T  47322055 gaggtgtagaattgattttgacatgttttgttgt 47322022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 47498962 - 47499034
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacagt 461  Q
    |||||||||| ||| ||||||||| | |||  ||| ||||||||||||  ||||| ||||||||||||||||||    
T  47498962 agcttatacacaagcgcttatcatgataagcacttgtgctataagctg-caaataagttgtttatccaaacagt 47499034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 5894282 - 5894353
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||| ||||||||| | |||  ||| ||||||||||| | ||||| | |||||||||||||||    
T  5894282 agcttatacataagcgcttatcatgataagcacttgtgctataagct-tcaaataagctgtttatccaaacag 5894353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 6041620 - 6041660
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||| |||||||||| |||||||||||| |||||||||||    
T  6041620 tgattctagaggtgtaaaattgattttgatatgtttggttg 6041660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 9939890 - 9939846
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| |||||||||| |||| ||||||||||||||||||    
T  9939890 aaaactgattctagaggtgtaaaattaattttgacatgtttggtt 9939846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 10280557 - 10280521
Alignment:
Q  424 tgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||| || |||||||||||||||||    
T  10280557 tgctataagctgtaaactaagttgtttatccaaacag 10280521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 23052431 - 23052399
Alignment:
Q  510 agaggtgtagaattgattttgacatgtttggtt 542  Q
    |||||||||||||||||||||||| ||||||||    
T  23052431 agaggtgtagaattgattttgacaagtttggtt 23052399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 37131862 - 37131902
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||| ||||||| |||||||||||||| ||||||||||||    
T  37131862 tgattctagaggtatagaattgattttggcatgtttggttg 37131902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 510 - 542
Target Start/End: Complemental strand, 49079364 - 49079332
Alignment:
Q  510 agaggtgtagaattgattttgacatgtttggtt 542  Q
    ||||||||||| |||||||||||||||||||||    
T  49079364 agaggtgtagagttgattttgacatgtttggtt 49079332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 3735596 - 3735691
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||| |||||| ||||||||||||||||||| |||||| ||||||||| | ||  |||| ||||||||||||  ||||| |||||||||||||||||    
T  3735596 tttgctatagaaatagcttatgtaagcttatccataagcgcttatcatgataatctcttgtgctataagctg-caaataggttgtttatccaaacag 3735691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 3043179 - 3043121
Alignment:
Q  485 ttatggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||    
T  3043179 ttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgtttagttg 3043121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 7319123 - 7319191
Alignment:
Q  371 tagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaa 439  Q
    |||| ||||||||||||||||||| |||||||||||||||| | |||  ||| ||||||||||||||||    
T  7319123 tagaaatagcttatgtaagcttatgcataagtgcttatcatgataagcgcttgtgctataagctgtaaa 7319191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 39097192 - 39097232
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39097192 tgattatagaggtgtagaattgattttgacatgtttggttg 39097232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 459
Target Start/End: Complemental strand, 32372577 - 32372495
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||| |||||||||  |||||||||| ||||||||| | |||| ||| ||||||||||||  ||||| ||||||||||||||||    
T  32372577 atagtttatgtaagtgtatacataagggcttatcatgataagtgcttgtgctataagctg-caaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 543
Target Start/End: Complemental strand, 16294039 - 16293999
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  16294039 tgattatagaagtgtagaattgattttaacatgtttggttg 16293999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 543
Target Start/End: Original strand, 10898635 - 10898690
Alignment:
Q  488 tggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||||||| |||| ||||| ||||| ||| ||||| |||||||||||||||||||    
T  10898635 tggaggaatcaaaattgattctagagctgtcgaattaattttgacatgtttggttg 10898690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 539
Target Start/End: Original strand, 10957382 - 10957425
Alignment:
Q  496 taaaaaatgattatagaggtgtagaattgattttgacatgtttg 539  Q
    |||||| |||||| | ||||||||||||||||||||||||||||    
T  10957382 taaaaattgattaaaaaggtgtagaattgattttgacatgtttg 10957425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 544
Target Start/End: Original strand, 29922833 - 29922863
Alignment:
Q  514 gtgtagaattgattttgacatgtttggttgt 544  Q
    |||||||||||||||||||||||||||||||    
T  29922833 gtgtagaattgattttgacatgtttggttgt 29922863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 459
Target Start/End: Original strand, 26005349 - 26005437
Alignment:
Q  370 atagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    ||||| |||||||||| |||||||||||||||   ||||||| | ||||  || ||||||||||| |  |||| ||||||||||||||||    
T  26005349 atagaaatagcttatgcaagcttatacataagcaattatcataataagtgtttgtgctataagct-tctaataagttgtttatccaaaca 26005437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 460
Target Start/End: Complemental strand, 6593215 - 6593179
Alignment:
Q  424 tgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||| || |||||||||||||||||    
T  6593215 tgctataagctgtaaattaagttgtttatccaaacag 6593179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 12405041 - 12404997
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| |||||||  ||||||| |||||||||||||||||||||||    
T  12405041 aaaattgattatgaaggtgtataattgattttgacatgtttggtt 12404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 28776926 - 28776855
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||||||||||||  |||||||| | |||| |||  |||||||||||  ||||| |||||||||||||||||    
T  28776926 agcttatacataagcacttatcatgataagtgcttaggctataagctg-caaataagttgtttatccaaacag 28776855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 460
Target Start/End: Original strand, 34590355 - 34590419
Alignment:
Q  396 cataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||| | || | ||| | |||||||||| |||||| || ||||||||||||||    
T  34590355 cataagtgcttatcatgataaatacttatcctataagctgcaaaataagtcgtttatccaaacag 34590419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 410
Target Start/End: Original strand, 40439066 - 40439106
Alignment:
Q  370 atagagatagcttatgtaagcttatacataagtgcttatca 410  Q
    ||||| ||||||||||||||||||||||| ||||| |||||    
T  40439066 atagaaatagcttatgtaagcttatacatgagtgcctatca 40439106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 538
Target Start/End: Original strand, 42857811 - 42857851
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgttt 538  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  42857811 aaaattgattatagaggtgtagaattgactttgaaatgttt 42857851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 50681206 - 50681288
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    ||||||| |||||||||||||||||  ||||||||| | |||||||| ||||||||||| | ||||| ||||||||||||||||    
T  50681206 atagcttttgtaagcttatacataaacgcttatcatgataagttcttgtgctataagctat-aaataagttgtttatccaaaca 50681288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 360 - 434
Target Start/End: Complemental strand, 19494883 - 19494809
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagct 434  Q
    |||||||| ||||||  |||||||||||| |||||||||| ||||||||||| | |||| ||| |||||||||||    
T  19494883 atcatttgctatagaactagcttatgtaaccttatacataggtgcttatcatgaaaagtacttgtgctataagct 19494809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 544
Target Start/End: Complemental strand, 49138997 - 49138951
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  49138997 aaaattgattctagaggtgtagaattgattctgacatgtttggttgt 49138951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 41336714 - 41336654
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgt 436  Q
    |||||||||| |||| |||||||||||||||||||| | |||  ||| |||||||||||||    
T  41336714 atagcttatgcaagcctatacataagtgcttatcataataagaacttgtgctataagctgt 41336654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 31851423 - 31851372
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    ||||||||||||| | ||||||||||| ||||| ||||||| ||||||||||    
T  31851423 atcatttgttataaaaatagcttatgtgagcttctacataaatgcttatcat 31851372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 43505909 - 43505874
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||||||||| |||||||||||||||||||||||||    
T  43505909 atagcttatgcaagcttatacataagtgcttatcat 43505874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 540
Target Start/End: Complemental strand, 50358177 - 50358134
Alignment:
Q  497 aaaaaatgattatagaggtgtagaattgattttgacatgtttgg 540  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||||    
T  50358177 aaaaattgattctagaggtgtagaattgattttgacatgcttgg 50358134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 22030164 - 22030122
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||||| ||||||||||| |||||||||||||| |||||||||    
T  22030164 tatagaaatagcttatgtgagcttatacataagcgcttatcat 22030122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 545
Target Start/End: Complemental strand, 31013890 - 31013848
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttgta 545  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||    
T  31013890 tgattttagatgtgtaaaattgattttgacatgtttggttgta 31013848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 39178392 - 39178426
Alignment:
Q  426 ctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||||||||||||||| |||||||||||||||||    
T  39178392 ctataagctgtaaaataagttgtttatccaaacag 39178426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 16551880 - 16551925
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||| ||||||||||||||||||| |||||||| ||||||    
T  16551880 aaaattgattttagaggtgtagaattgattctgacatgtatggttg 16551925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Complemental strand, 27967998 - 27967953
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| |||||||| |||||||||||||||| |||||||| ||||||    
T  27967998 aaaattgattatataggtgtagaattgattatgacatgtatggttg 27967953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 35064986 - 35065031
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||||| ||||||||||||||||| |||||| ||||||||    
T  35064986 aaaattgattatggaggtgtagaattgattatgacatttttggttg 35065031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 45329769 - 45329814
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| |||||||||||||||| |||||| ||| |||||||||||||    
T  45329769 aaaattgattatagaggtgtaaaattgactttaacatgtttggttg 45329814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 17204089 - 17204006
Alignment:
Q  378 agcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacagtc 462  Q
    |||||||||||||| | ||||||| | ||||| | | |||| ||| | |||||||||| ||| || |||||||||||||||||||    
T  17204089 agcttatgtaagctaacacataagcggttatcgtgataagtgcttgttctataagctgcaaa-taagttgtttatccaaacagtc 17204006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 30066885 - 30066957
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||| ||||||||||||| | |||  ||| |||||||||||| ||| ||  |||||||| |||||||    
T  30066885 agcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaaattgtttatgcaaacag 30066957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 464
Target Start/End: Original strand, 44863081 - 44863156
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacagtctg 464  Q
    ||||||| ||||||  |||||||| | |||| ||| ||||||||||||  ||||| |||||||||||||||| ||||    
T  44863081 agcttatgcataagcacttatcatgacaagtgcttgtgctataagctg-caaataagttgtttatccaaacactctg 44863156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 376 - 460
Target Start/End: Complemental strand, 41407254 - 41407171
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||||||||||||||||||||||| | |||  ||| ||||||||||||  ||| | | |||||||||||||||    
T  41407254 atagcttatgtaagcttatacataagtgcttatcatgataagcgcttgtgctataagctg-caaacaagctgtttatccaaacag 41407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 460
Target Start/End: Complemental strand, 11863890 - 11863801
Alignment:
Q  370 atagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||| ||||||||||||||||||| |||||| ||||||||| | ||||  || |||| ||||||| |||||| |||||||||||| ||||    
T  11863890 atagaaatagcttatgtaagcttatgcataagcgcttatcatgacaagtgtttgtgctgtaagctg-aaaataagttgtttatccagacag 11863801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 15928583 - 15928550
Alignment:
Q  511 gaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||||||||||||||||||||||||||||||    
T  15928583 gaggtgtagaattgattttgacatgtttggttgt 15928550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 540
Target Start/End: Complemental strand, 37420354 - 37420317
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttgg 540  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  37420354 tgattctagaggtgtagaattgattttgacatgtttgg 37420317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 31561854 - 31561930
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgt 436  Q
    ||||||| ||||||| ||||||||||||||||||||  |||| ||||||||| | ||   ||| |||||||||||||    
T  31561854 atcatttattatagatatagcttatgtaagcttatatgtaagcgcttatcatgataaacgcttgtgctataagctgt 31561930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 40582672 - 40582716
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||    
T  40582672 aaaattgattctagaggtgtagaattgattttaacatgtttggtt 40582716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 503 - 542
Target Start/End: Original strand, 7629790 - 7629829
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  7629790 tgattctagaggtgtagaattgattttgtcatgtttggtt 7629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 432
Target Start/End: Original strand, 41241242 - 41241305
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataag 432  Q
    |||||| ||||||||||||||||||| |||||| || |||||| | |||| ||| |||||||||    
T  41241242 tatagaaatagcttatgtaagcttatccataagcgcatatcatgataagtgcttgtgctataag 41241305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 42659268 - 42659303
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||||||||||||||||||||||||| |||||||||    
T  42659268 atagcttatgtaagcttatacataagcgcttatcat 42659303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 434
Target Start/End: Original strand, 32364843 - 32364889
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagct 434  Q
    |||||||||||||||||||||||| | |||||||  |||||||||||    
T  32364843 agcttatacataagtgcttatcatgataagttctcatgctataagct 32364889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 43717265 - 43717307
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttgg 540  Q
    |||| ||||| |||| |||||||||||||||||||||||||||    
T  43717265 aaaattgattctagatgtgtagaattgattttgacatgtttgg 43717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 9833103 - 9833042
Alignment:
Q  391 ttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttat 452  Q
    ||||||||||||| ||||||| | || | ||| |||||||||||||||| || |||||||||    
T  9833103 ttatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaagttgtttat 9833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 19608744 - 19608815
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||||||||||||||||||||||   | || ||| ||||||||||||  ||||||| ||| |||||||||||    
T  19608744 agcttatacataagtgcttatcatggtatgtgcttgtgctataagctg-caaatatgctgtatatccaaacag 19608815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 539
Target Start/End: Original strand, 37561635 - 37561671
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttg 539  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  37561635 tgattctagaggtgtaaaattgattttgacatgtttg 37561671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 14956412 - 14956494
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||||||||| ||||||||||||||||||||||||| | |||   || ||||||||||||  ||||| ||||||||||||||||    
T  14956412 atagcttatgcaagcttatacataagtgcttatcatgataagcgattgtgctataagctg-caaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 460
Target Start/End: Original strand, 1058178 - 1058274
Alignment:
Q  363 atttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    ||||| |||| | |||||||||||||||||||||||||| |||||||||   |||  ||| ||||||||||||  ||||| | ||||||| |||||||    
T  1058178 atttgctataaaaatagcttatgtaagcttatacataagcgcttatcatagtaagcgcttgtgctataagctg-caaataagctgtttattcaaacag 1058274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 42043450 - 42043495
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatc 409  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||    
T  42043450 tttgctatagaaatagcatatgtaagcttatacataagtgcttatc 42043495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Complemental strand, 12976178 - 12976131
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||| |||||| ||||||||||| |||||||||||||| |||||||||    
T  12976178 tttgctatagaaatagcttatgtgagcttatacataagcgcttatcat 12976131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 540
Target Start/End: Original strand, 8252725 - 8252762
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttgg 540  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  8252725 tgattctagaggtgtagaactgattttgacatgtttgg 8252762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 13384803 - 13384770
Alignment:
Q  511 gaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||||||||||||| ||||||||||||||||    
T  13384803 gaggtgtagaattgattctgacatgtttggttgt 13384770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 42455835 - 42455880
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||||| |||  ||||||||||||||||||||||||||||    
T  42455835 aaaattgattatggagcagtagaattgattttgacatgtttggttg 42455880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 45508309 - 45508256
Alignment:
Q  256 attcctccttctcctagagatgatgccatgcaactttaccgtgcttttaaaggt 309  Q
    ||||||||||| || ||||| ||||| ||||||||| |||||||||| ||||||    
T  45508309 attcctccttcccccagagacgatgctatgcaacttcaccgtgctttcaaaggt 45508256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 4389863 - 4389823
Alignment:
Q  420 cttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||| |||||| ||| |||||||||||||    
T  4389863 cttctgctataagctgcaaaataagttatttatccaaacag 4389823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 25930664 - 25930696
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataag 401  Q
    |||||| ||||||||||||||||||||||||||    
T  25930664 tatagaaatagcttatgtaagcttatacataag 25930696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 460
Target Start/End: Complemental strand, 26215447 - 26215376
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||| ||||||||| | |||  ||  |||||||||||| |||||| ||||||||| |||||||    
T  26215447 agcttatacataagcgcttatcattataagcgctcgtgctataagctg-aaaataagttgtttatacaaacag 26215376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 39648307 - 39648263
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| ||||| |||| |||||||||||||||||||||||    
T  39648307 aaaattgattctagagatgtataattgattttgacatgtttggtt 39648263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 30956731 - 30956825
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||| |||||| ||||||||||||||||||| ||||| |||||||||| | |||  ||| ||||||||||||  ||||| | ||||||||||||||    
T  30956731 tttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatgataagcccttgtgctataagctg-caaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 30972543 - 30972637
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||| |||||| ||||||||||||||||||| ||||| |||||||||| | |||  ||| ||||||||||||  ||||| | ||||||||||||||    
T  30972543 tttgctatagaaatagcttatgtaagcttatgcataaatgcttatcatgataagcccttgtgctataagctg-caaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 542
Target Start/End: Original strand, 3776470 - 3776506
Alignment:
Q  506 ttatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||||||||||||||||||||||||||||||||||||    
T  3776470 ttatagaggtgtagaattgattttgacatgtttggtt 3776506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 5331247 - 5331183
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaa 440  Q
    |||||||||| |||||||||||||||||||||| |||| ||||  || |||||||||||| ||||    
T  5331247 atagcttatgcaagcttatacataagtgcttattatcataagtgtttatgctataagctgcaaaa 5331183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 543
Target Start/End: Complemental strand, 52925783 - 52925728
Alignment:
Q  488 tggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||||| | |||| ||||| |||||||||| ||||||||||||||||||||||||    
T  52925783 tggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggttg 52925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 3845307 - 3845233
Alignment:
Q  466 tggtatatgtttgattcca-ttatggaggaataaaaaatgattatagaggtgtagaattgattttgacatgtttg 539  Q
    |||| |||||||| ||||| || ||||| ||  |||| ||||| |||||||||||||||||||||||||||||||    
T  3845307 tggtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttg 3845233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 53789571 - 53789613
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  53789571 tatagaaatagcttatgtaagcttacacataagtgcttatcat 53789613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 29520595 - 29520659
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaa 440  Q
    |||||||||| |||||||||||||||||||||| || | ||||  || |||||||||||| ||||    
T  29520595 atagcttatgcaagcttatacataagtgcttattatgataagtgtttatgctataagctgcaaaa 29520659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 460
Target Start/End: Original strand, 30574031 - 30574103
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||| ||||||||| | || | ||| || ||||||||| ||| |||| |||||||||||||||    
T  30574031 agcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaattatggtgtttatccaaacag 30574103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 378 - 460
Target Start/End: Original strand, 31365391 - 31365472
Alignment:
Q  378 agcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||| ||||||||||||||||||||||||| | ||   ||| ||||||||||||  ||||| | |||||||||| ||||    
T  31365391 agcttatgcaagcttatacataagtgcttatcatgataatcacttgtgctataagctg-caaataagctgtttatccacacag 31365472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 459
Target Start/End: Original strand, 35959566 - 35959655
Alignment:
Q  369 tatagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaaca 459  Q
    |||||| ||||||||||| ||||||||||||||  |||||||| | |||  ||| || |||||||||  ||||| | ||||||||||||||    
T  35959566 tatagaaatagcttatgtgagcttatacataagctcttatcatgataagagcttgtgatataagctg-caaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 39256609 - 39256639
Alignment:
Q  509 tagaggtgtagaattgattttgacatgtttg 539  Q
    |||||||||||||||||||||||||||||||    
T  39256609 tagaggtgtagaattgattttgacatgtttg 39256639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 460
Target Start/End: Complemental strand, 47132308 - 47132247
Alignment:
Q  398 taagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||| | |||| ||| ||||||||| || |||||| |||||||||||||||||    
T  47132308 taagtgcttatcatgataagtgcttgtgctataaggtg-aaaataagttgtttatccaaacag 47132247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 1290704 - 1290749
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||| |||||||||||||||||||||||  ||||||||||    
T  1290704 aaaattgattctagaggtgtagaattgattttgatttgtttggttg 1290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 542
Target Start/End: Complemental strand, 1441532 - 1441499
Alignment:
Q  509 tagaggtgtagaattgattttgacatgtttggtt 542  Q
    ||||||||||||||||| ||||||||||||||||    
T  1441532 tagaggtgtagaattgagtttgacatgtttggtt 1441499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 543
Target Start/End: Original strand, 7262821 - 7262866
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||| ||||| |||||||| |||||||||| |||||||||||||||    
T  7262821 aaaattgattttagaggtgaagaattgattctgacatgtttggttg 7262866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 20880446 - 20880405
Alignment:
Q  360 atcatttgttatagagatagcttatgtaagcttatacataag 401  Q
    |||||||| |||| | ||||||||||||||||||||||||||    
T  20880446 atcatttgctataaaaatagcttatgtaagcttatacataag 20880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 453
Target Start/End: Original strand, 28795949 - 28796025
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatc 453  Q
    |||| ||| ||||||||||||||||||| ||||||| | || |  || ||||||||||||| ||||| ||||||||||    
T  28795949 atagtttaggtaagcttatacataagtgtttatcatgataaatgtttgtgctataagctgt-aaataagttgtttatc 28796025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 2719427 - 2719359
Alignment:
Q  371 tagagatagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaa 439  Q
    |||| ||||||| ||||||||||| | |||||||||||||| | |||   || ||||||||||||||||    
T  2719427 tagaaatagcttgtgtaagcttatgcgtaagtgcttatcatgataagcgtttgtgctataagctgtaaa 2719359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 7717535 - 7717491
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| ||||||| |||| |||||||||||||||||||||    
T  7717535 aaaattgattgtagaggtttagagttgattttgacatgtttggtt 7717491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 543
Target Start/End: Complemental strand, 44958755 - 44958723
Alignment:
Q  511 gaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||||||||||||||| |||||||||||||||    
T  44958755 gaggtgtagaattgattctgacatgtttggttg 44958723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 460
Target Start/End: Original strand, 21568745 - 21568828
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||| ||||||||||||||||||||||||| | |||  ||| ||||||||||||  ||| | | |||||||||||||||    
T  21568745 atagcttatgcaagcttatacataagtgcttatcatgataagcacttatgctataagctg-caaacaagctgtttatccaaacag 21568828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 542
Target Start/End: Original strand, 45004908 - 45004952
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  45004908 aaaattgattctagaggtgtagaattgattttgacatgtttggtt 45004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 45806594 - 45806653
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctg 435  Q
    |||||||||| |||||||||||||||||||||| || | |||| ||| ||||||||||||    
T  45806594 atagcttatgcaagcttatacataagtgcttattatgataagtgcttttgctataagctg 45806653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 543
Target Start/End: Original strand, 12306668 - 12306702
Alignment:
Q  509 tagaggtgtagaattgattttgacatgtttggttg 543  Q
    |||||||||||||||||||||||||||||||||||    
T  12306668 tagaggtgtagaattgattttgacatgtttggttg 12306702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 411
Target Start/End: Original strand, 4970893 - 4970940
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||| |||||| |||||||||||||||||||||||||  |||||||||    
T  4970893 tttgctatagaaatagcttatgtaagcttatacataaccgcttatcat 4970940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 28725215 - 28725168
Alignment:
Q  497 aaaaaatgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    ||||||||||| | ||| |||||||||||||| |||||||||||||||    
T  28725215 aaaaaatgatttttgagatgtagaattgatttagacatgtttggttgt 28725168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 434
Target Start/End: Complemental strand, 20428416 - 20428362
Alignment:
Q  380 cttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagct 434  Q
    ||||||||| |||||||||||| ||||||||| ||||||  || |||||||||||    
T  20428416 cttatgtaaccttatacataagcgcttatcatgagaagtgtttgtgctataagct 20428362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 7612410 - 7612346
Alignment:
Q  388 agcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttat 452  Q
    |||||||||||| | ||||||||| | |||| ||| |||||||||||| ||| || |||||||||    
T  7612410 agcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaagttgtttat 7612346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 542
Target Start/End: Complemental strand, 38123810 - 38123766
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 542  Q
    |||| ||||| ||||| ||||||||||||||| ||||||||||||    
T  38123810 aaaattgattctagagatgtagaattgattttaacatgtttggtt 38123766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 543
Target Start/End: Original strand, 41841091 - 41841131
Alignment:
Q  503 tgattatagaggtgtagaattgattttgacatgtttggttg 543  Q
    ||||||| |||||||| |||||| |||||||||||||||||    
T  41841091 tgattatggaggtgtaaaattgactttgacatgtttggttg 41841131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 48140181 - 48140137
Alignment:
Q  364 tttgttatagagatagcttatgtaagcttatacataagtgcttat 408  Q
    ||||||||| | |||||||||| ||||||||||||||| ||||||    
T  48140181 tttgttataaaaatagcttatgcaagcttatacataagcgcttat 48140137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 544
Target Start/End: Original strand, 31749 - 31795
Alignment:
Q  498 aaaaatgattatagaggtgtagaattgattttgacatgtttggttgt 544  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  31749 aaaattgattctagaggtgtagaattgattctgacatgtttggttgt 31795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Original strand, 207698 - 207733
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcat 411  Q
    |||||||||| |||||||||||||||||||||||||    
T  207698 atagcttatgcaagcttatacataagtgcttatcat 207733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 460
Target Start/End: Complemental strand, 158060 - 157977
Alignment:
Q  376 atagcttatgtaagcttatacataagtgcttatcatcagaagttcttctgctataagctgtaaaatatgttgtttatccaaacag 460  Q
    |||||||||||||||| || ||||||   ||||||||| ||||  || ||||||||||||  ||||| | |||||||||||||||    
T  158060 atagcttatgtaagctaatgcataagcaattatcatcataagtgtttgtgctataagctg-caaataagctgtttatccaaacag 157977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University