View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_27 (Length: 310)
Name: NF14359_high_27
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 686957 - 687233
Alignment:
| Q |
16 |
atccaaaaaggggtgtttgataagaaggtttgttaatcatagaatgcacttgaatgccaagtgatttgttacacaagccataagaaggtagagaagaagc |
115 |
Q |
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| T |
686957 |
atccaaaaaggggtgtttgataagaaggtttgttaatcatagaatgcacttgaatgccaagtgatttgttacacaagccataagaaggtagagaagaagc |
687056 |
T |
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| Q |
116 |
catgctagttgtatagcctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcag |
215 |
Q |
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| T |
687057 |
catgctagttgtatagcctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcag |
687156 |
T |
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| Q |
216 |
tagttgcaggaaaaaactctcggatcaagttcattctcatgactagattcggaggagctttccgataaatttgcatg |
292 |
Q |
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| T |
687157 |
tagttgcatgaaaaaactctcggatcaagttcattctcatgactagattcggaggagctttccgataaatttgcatg |
687233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 704324 - 704600
Alignment:
| Q |
16 |
atccaaaaaggggtgtttgataagaaggtttgttaatcatagaatgcacttgaatgccaagtgatttgttacacaagccataagaaggtagagaagaagc |
115 |
Q |
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| T |
704324 |
atccaaaaaggggtgtttgataagaaggtttgttaatcatagaatgcacttgaatgccaagtgatttgttacacaagccataagaaggtagagaagaagc |
704423 |
T |
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| Q |
116 |
catgctagttgtatagcctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcag |
215 |
Q |
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| T |
704424 |
catgctagttgtatagcctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcag |
704523 |
T |
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| Q |
216 |
tagttgcaggaaaaaactctcggatcaagttcattctcatgactagattcggaggagctttccgataaatttgcatg |
292 |
Q |
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| T |
704524 |
tagttgcatgaaaaaactctcggatcaagttcattctcatgactagattcggaggagctttccgataaatttgcatg |
704600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 53465373 - 53465307
Alignment:
| Q |
157 |
gcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgca |
223 |
Q |
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| T |
53465373 |
gcttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgca |
53465307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 45217858 - 45217949
Alignment:
| Q |
132 |
cctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgca |
223 |
Q |
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| T |
45217858 |
cctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgca |
45217949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 33032573 - 33032646
Alignment:
| Q |
162 |
tgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcaggaaaaaactct |
235 |
Q |
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| T |
33032573 |
tgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaactct |
33032646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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