View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_29 (Length: 302)
Name: NF14359_high_29
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 10355245 - 10355541
Alignment:
| Q |
1 |
aatcaagacctcacttcaaaaaataatcgtgccagaaactttataaccatttaaaagatcaaaatagttctagtttacagtgcagggaaaatattttgat |
100 |
Q |
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| T |
10355245 |
aatcaagacctcacttcaaaaaataatcgtgccagaaactttataaccatttaaaagatcaaaatagttctagtttacagtgcagggaaaatattttgat |
10355344 |
T |
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| Q |
101 |
tccaatggattctatctatgttgtagctggtattcatttaaaagattttgacagca----------gcaaaccattacgatatgtggcattattctatta |
190 |
Q |
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| T |
10355345 |
tccaatggattctttctatgttgtagctggtattcatttaaaagattttgacagcagcaaaccattgcaaaccattacgagatgtggcattattccatta |
10355444 |
T |
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| Q |
191 |
tctaaataaccaaccaactttctgt-nnnnnnnntaaccaaccaaacaattattttagttaaagatatttccagatctaattatctttctaacaaac |
286 |
Q |
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| T |
10355445 |
cctaaataaccaaccaactttctgtaaaaaaaaataaccaaccaaacaattattttagttaaagatatttccagatctaattatctttctaacaaac |
10355541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 10350854 - 10350915
Alignment:
| Q |
60 |
caaaatagttctagtttacagtgcagggaaaatattttgattccaatggattctatctatgt |
121 |
Q |
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| T |
10350854 |
caaaattgttctagtttacaatgcagggaaaatattttgtttccaatggattctttctatgt |
10350915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 10350986 - 10351048
Alignment:
| Q |
224 |
taaccaaccaaacaattattttagttaaagatatttccagatctaattatctttctaacaaact |
287 |
Q |
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| T |
10350986 |
taaccaaccaa-caattattttagtaaaagatatttcaagatttaattatctttttaacaaact |
10351048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 10350949 - 10350997
Alignment:
| Q |
160 |
aaccattacgatatgtggcattattctattatctaaataaccaaccaac |
208 |
Q |
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| T |
10350949 |
aaccattacgatgtgtggcattattccattacctaaataaccaaccaac |
10350997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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