View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_3 (Length: 492)
Name: NF14359_high_3
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Original strand, 42662622 - 42663067
Alignment:
| Q |
11 |
cagagagaggtaatatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
110 |
Q |
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| T |
42662622 |
cagagagaggtaagatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
42662721 |
T |
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| Q |
111 |
ctcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
210 |
Q |
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| T |
42662722 |
atcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
42662821 |
T |
|
| Q |
211 |
tcctcactcatttgtagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataagga |
310 |
Q |
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| T |
42662822 |
tcttcactcatttgtagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataagga |
42662921 |
T |
|
| Q |
311 |
gaaaggctttggctcctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662922 |
gaaaggctttggctcctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttct |
42663021 |
T |
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| Q |
411 |
tgatatcagtggaaactggtaataatacaagaaattaagggtttaa |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663022 |
tgatatcagtggaaactggtaataatacaagaaattaagggtttaa |
42663067 |
T |
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