View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_39 (Length: 249)
Name: NF14359_high_39
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 41570943 - 41571181
Alignment:
| Q |
1 |
cccgccatcattgtttaacttgtctcaacttgattactttgattgttcttataataaattaaagggtcctctacccaacaaaataacagggtttcaaaac |
100 |
Q |
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| T |
41570943 |
cccgccatcattgtttaacttgtctcaacttgattactttgattgttcttataataaattaaagggtcctctacccaacaaaataacagggtttcaaaac |
41571042 |
T |
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| Q |
101 |
ttaggttatttactattaaataacaatttactaagtggaaaaattccttcatggtgtttatccataccatctttgacaatgttggatctatcaaataatc |
200 |
Q |
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| T |
41571043 |
ttaggttatttactattaaataacaatttactaagtggaaaaattccttcatggtgtttatccataccatctttgacaatgttggatctatcaaataatc |
41571142 |
T |
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| Q |
201 |
agtttactggaaatataagtgcagtctcatcatattctt |
239 |
Q |
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| T |
41571143 |
agtttactggaaatataagtgcagtctcatcatattctt |
41571181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 30019982 - 30019877
Alignment:
| Q |
132 |
taagtggaaaaattccttcatggtgtttatccataccatctttgacaatgttggatctatcaaataatcagtttactggaaatataagtgcagtctcatc |
231 |
Q |
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| T |
30019982 |
taagtggaaaaatttcttcatgatgtttatatttaccatctatgacaagattggatctatcaa--aataaatttacaagaaatagaagtgcaatctcatc |
30019885 |
T |
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| Q |
232 |
atattctt |
239 |
Q |
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| T |
30019884 |
atgttctt |
30019877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 11119235 - 11119142
Alignment:
| Q |
6 |
catcattgtttaacttgtctcaacttgattactttgattgttcttataataaattaaagggtcctctacccaacaaaataacagggtttcaaaa |
99 |
Q |
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| T |
11119235 |
catcattatttaacttgactcaacttgttgcattaggttgttctaataataaattagatggtcccctgcccaacaaaattacagggttccaaaa |
11119142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 25521996 - 25522053
Alignment:
| Q |
42 |
attgttcttataataaattaaagggtcctctacccaacaaaataacagggtttcaaaa |
99 |
Q |
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|||||||| ||||||||||| |||||||| |||| |||||||| | |||||| ||||| |
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| T |
25521996 |
attgttctaataataaattagagggtcctttacctaacaaaattatagggttccaaaa |
25522053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 8524193 - 8524118
Alignment:
| Q |
8 |
tcattgtttaacttgtctcaacttgattacttt-gattgttcttataataaattaaagggtcctctacccaacaaaa |
83 |
Q |
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||||| ||||||||| |||| |||| ||||||| ||||||||| ||||||||||| | ||||| |||||||||||| |
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| T |
8524193 |
tcattatttaacttgactcatcttg-ttactttagattgttctcataataaattagatggtcccttacccaacaaaa |
8524118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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