View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_high_47 (Length: 234)

Name: NF14359_high_47
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_high_47
NF14359_high_47
[»] chr3 (3 HSPs)
chr3 (1-183)||(249302-249484)
chr3 (3-141)||(19142271-19142409)
chr3 (64-141)||(38396758-38396835)
[»] chr2 (2 HSPs)
chr2 (1-148)||(5546318-5546465)
chr2 (108-141)||(25524908-25524941)
[»] chr6 (1 HSPs)
chr6 (60-141)||(5652927-5653008)
[»] chr4 (1 HSPs)
chr4 (60-162)||(45671438-45671540)
[»] chr7 (1 HSPs)
chr7 (60-162)||(5230008-5230110)
[»] chr5 (3 HSPs)
chr5 (1-148)||(20543502-20543649)
chr5 (93-130)||(13810992-13811029)
chr5 (93-130)||(13959677-13959714)
[»] chr8 (4 HSPs)
chr8 (81-162)||(12811923-12812004)
chr8 (64-141)||(34830906-34830983)
chr8 (6-139)||(36350223-36350356)
chr8 (71-140)||(27527480-27527549)
[»] chr1 (1 HSPs)
chr1 (79-142)||(46039606-46039669)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 249484 - 249302
Alignment:
Q  1 ggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249484 ggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatc 249385  T
Q  101 agttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaatattcaaacaacaagtatgttc 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  249384 agttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaatattcaaacaacaagtatgttc 249302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 141
Target Start/End: Complemental strand, 19142409 - 19142271
Alignment:
Q  3 ggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatcag 102  Q
    ||||| ||||| || || |||||||| || || || ||||||||||| |||||||||||  || | |||||| |  ||||||||||||||||| |||| |    
T  19142409 ggaaaaattgaaatcaagaggattgaaaacactaccaataggcaagtcactttttgcaaacgacgcaatggattgttgaagaaagcttatgaattatccg 19142310  T
Q  103 ttttgtgtgatgctgaagttgctctcattgtcttctcca 141  Q
    || | |||||||| |||||||||||  ||||||||||||    
T  19142309 ttctttgtgatgccgaagttgctcttgttgtcttctcca 19142271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 38396758 - 38396835
Alignment:
Q  64 gaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 141  Q
    |||| ||||| ||| |||| |||||||||||||| || ||| | |||||||| || ||||||||||| ||||||||||    
T  38396758 gaagaaatggtcttttgaaaaaagcttatgaactttctgttctttgtgatgcagaggttgctctcatcgtcttctcca 38396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 5546318 - 5546465
Alignment:
Q  1 ggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatc 100  Q
    |||||||||||||||| ||||||||||| || || || ||| | ||||| ||||| ||||| ||||| |||||  |  |||||||||| |||||| ||||    
T  5546318 ggggaaagattgagatcaaaaggattgaaaacacgacgaatcgtcaagtaactttctgcaaaagaagaaatggtttgttgaagaaagcatatgaattatc 5546417  T
Q  101 agttttgtgtgatgctgaagttgctctcattgtcttctccagccgtgg 148  Q
     ||| | |||||||| ||||||||||| || |||||||| ||||||||    
T  5546418 tgttctttgtgatgcagaagttgctcttatagtcttctctagccgtgg 5546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 25524908 - 25524941
Alignment:
Q  108 tgtgatgctgaagttgctctcattgtcttctcca 141  Q
    |||||||||||||||||||| |||||||||||||    
T  25524908 tgtgatgctgaagttgctcttattgtcttctcca 25524941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 5652927 - 5653008
Alignment:
Q  60 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 141  Q
    |||||||| ||||||||||| ||||||||||||||| |||| ||| | |||||||||||||||||||| ||| |||||||||    
T  5652927 aagagaagaaatggacttcttaagaaagcttatgaattatctgttctttgtgatgctgaagttgctcttattatcttctcca 5653008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 45671438 - 45671540
Alignment:
Q  60 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatg 159  Q
    |||||||| |||||  | || ||||| ||||||||||| |||||| | |||||||||||||||||||| ||  ||||||||| |||||||| ||| ||||    
T  45671438 aagagaagaaatggtgtactcaagaaggcttatgaactttcagttctttgtgatgctgaagttgctcttatcatcttctccaaccgtggcaaactatatg 45671537  T
Q  160 aat 162  Q
    |||    
T  45671538 aat 45671540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 5230008 - 5230110
Alignment:
Q  60 aagagaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatg 159  Q
    |||||||| ||||| ||||| ||||||||||||||||| || ||| | ||||||||||| |||||||| ||  |||||||||  ||||| |  |||||||    
T  5230008 aagagaagaaatggtcttcttaagaaagcttatgaactttctgttctttgtgatgctgaggttgctcttatcatcttctccactcgtggaaagctttatg 5230107  T
Q  160 aat 162  Q
    |||    
T  5230108 aat 5230110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 20543649 - 20543502
Alignment:
Q  1 ggggaaagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatc 100  Q
    |||||||| | ||| |||| ||||||||||| | || |||| | ||||| || |||   |||||||| |||||| | |||||||| ||||||||||| ||    
T  20543649 ggggaaaggtagagctaaagaggattgagaacaaaataaatcgtcaagttacatttgcaaagagaagaaatggaatgctgaagaaggcttatgaactctc 20543550  T
Q  101 agttttgtgtgatgctgaagttgctctcattgtcttctccagccgtgg 148  Q
      |  | ||||||||||| |||||||||||| | ||||| ||||||||    
T  20543549 tctcctttgtgatgctgaggttgctctcattattttctctagccgtgg 20543502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 13811029 - 13810992
Alignment:
Q  93 gaactatcagttttgtgtgatgctgaagttgctctcat 130  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13811029 gaactttcagttttgtgtgatgctgatgttgctctcat 13810992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 13959677 - 13959714
Alignment:
Q  93 gaactatcagttttgtgtgatgctgaagttgctctcat 130  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  13959677 gaactttcagttttgtgtgatgctgatgttgctctcat 13959714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 12812004 - 12811923
Alignment:
Q  81 aagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccagccgtggcagactttatgaat 162  Q
    ||||||||||||||||| || ||| | ||||||||||||||||| || ||  | ||||| |||||||||| ||| |||||||    
T  12812004 aagaaagcttatgaactgtctgttctctgtgatgctgaagttgcccttatcattttctctagccgtggcaaactctatgaat 12811923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 34830983 - 34830906
Alignment:
Q  64 gaaggaatggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcca 141  Q
    ||||||| || ||| |||| |||||||||||||| || ||| | |||||||||||||||||||| ||  |||||||||    
T  34830983 gaaggaacggtcttttgaaaaaagcttatgaactttctgttctttgtgatgctgaagttgctcttatcatcttctcca 34830906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 36350223 - 36350356
Alignment:
Q  6 aagattgagataaaaaggattgagaatacaacaaataggcaagtgactttttgcaagagaaggaatggacttctgaagaaagcttatgaactatcagttt 105  Q
    ||||||||||| || ||||||||||| ||||| ||| | ||||| || || |||||| | || |||||  | || ||||| || |||||| |||| ||      
T  36350223 aagattgagatcaagaggattgagaacacaacgaatcgtcaagttacgttctgcaagcgtagaaatggcttgcttaagaaggcatatgaattatctgtgc 36350322  T
Q  106 tgtgtgatgctgaagttgctctcattgtcttctc 139  Q
    | |||||||||||||||||||| || ||||||||    
T  36350323 tttgtgatgctgaagttgctcttatagtcttctc 36350356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 27527549 - 27527480
Alignment:
Q  71 tggacttctgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctcc 140  Q
    ||||||||| ||||||||| ||||  | || ||| | |||||||||||||||||| | ||||||||||||    
T  27527549 tggacttctcaagaaagctcatgagatctctgttctttgtgatgctgaagttgctttgattgtcttctcc 27527480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 46039669 - 46039606
Alignment:
Q  79 tgaagaaagcttatgaactatcagttttgtgtgatgctgaagttgctctcattgtcttctccag 142  Q
    |||||||||||| |||||| || || || |||||||||||||||||||| ||  ||||||||||    
T  46039669 tgaagaaagcttttgaactttctgtgttatgtgatgctgaagttgctcttatcatcttctccag 46039606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University