View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_high_48 (Length: 229)

Name: NF14359_high_48
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_high_48
NF14359_high_48
[»] chr5 (4 HSPs)
chr5 (16-107)||(40795037-40795128)
chr5 (118-155)||(23690516-23690553)
chr5 (118-155)||(39939048-39939085)
chr5 (118-155)||(39979698-39979735)
[»] chr7 (5 HSPs)
chr7 (118-155)||(29688939-29688976)
chr7 (118-155)||(21919703-21919740)
chr7 (118-147)||(27800043-27800072)
chr7 (118-155)||(41769301-41769338)
chr7 (123-155)||(15591740-15591772)
[»] chr6 (6 HSPs)
chr6 (118-155)||(1705960-1705997)
chr6 (118-155)||(2994337-2994374)
chr6 (118-155)||(14507975-14508012)
chr6 (118-155)||(21294144-21294181)
chr6 (118-147)||(10887824-10887853)
chr6 (118-155)||(10965978-10966015)
[»] chr1 (4 HSPs)
chr1 (118-155)||(38207544-38207581)
chr1 (118-155)||(40054942-40054979)
chr1 (118-155)||(43916361-43916398)
chr1 (119-155)||(1845089-1845125)
[»] chr8 (3 HSPs)
chr8 (118-147)||(6804023-6804052)
chr8 (118-147)||(12801468-12801497)
chr8 (118-154)||(30777287-30777323)
[»] chr4 (6 HSPs)
chr4 (118-147)||(4491218-4491247)
chr4 (118-155)||(19527078-19527115)
chr4 (118-155)||(39103552-39103589)
chr4 (118-155)||(53973471-53973508)
chr4 (120-148)||(19627949-19627977)
chr4 (127-155)||(39953609-39953637)
[»] chr3 (2 HSPs)
chr3 (118-147)||(52776464-52776493)
chr3 (118-154)||(29698337-29698373)
[»] chr2 (3 HSPs)
chr2 (118-147)||(12071516-12071545)
chr2 (118-155)||(15362484-15362521)
chr2 (118-155)||(41555446-41555483)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 40795128 - 40795037
Alignment:
Q  16 aggtttgatcaattaataaatttggttagaatggcatcatgcatggatattgaacnnnnnnntgtcgactcctttgaaatgttgattatata 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  40795128 aggtttgatcaattaataaatttggttagaagggcatcatgcatggatattgaacaaaaaaatgtcgactcctttgaaatgttgattatata 40795037  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 23690516 - 23690553
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  23690516 acacctcaaaaattgaggtgtaccggtatttctgcttc 23690553  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 39939048 - 39939085
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39939048 acacctcacaaattgaggtgtaccggtactcctgcttc 39939085  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 39979735 - 39979698
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  39979735 acacctcacaaattgaggtgtaccgatacttctgcttc 39979698  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 29688939 - 29688976
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  29688939 acacctcataaattgaggtgtaccggtactcctgcttc 29688976  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 21919703 - 21919740
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  21919703 acacctcacaaattgaggtgtaccggtactcctgcttc 21919740  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 27800043 - 27800072
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  27800043 acacctcataaattgaggtgtaccggtact 27800072  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 41769301 - 41769338
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  41769301 acacctcataaattgaggtgtactggtactcctgcttc 41769338  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 15591772 - 15591740
Alignment:
Q  123 tcataaattgaggtgtaccggtacttctgcttc 155  Q
    ||||||||| |||||||||||||||||||||||    
T  15591772 tcataaattaaggtgtaccggtacttctgcttc 15591740  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 1705997 - 1705960
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  1705997 acacctcataaattgaggtgtaccggtactcctgcttc 1705960  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 2994337 - 2994374
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  2994337 acacctcataaattgaggtgtaccggtactcctgcttc 2994374  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 14508012 - 14507975
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  14508012 acacctcataaattgaggtgtaccggtactcctgcttc 14507975  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 21294181 - 21294144
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  21294181 acacctcataaattgaggtgtaccggtactcctgcttc 21294144  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 10887824 - 10887853
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  10887824 acacctcataaattgaggtgtaccggtact 10887853  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 10966015 - 10965978
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  10966015 acacctcacaaattgaggtgtaccggtactcctgcttc 10965978  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 38207544 - 38207581
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38207544 acacctcataaattgaggtgtatcggtacttctgcttc 38207581  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 40054979 - 40054942
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  40054979 acacctcacaaattgaggtgtaccggtactcctgcttc 40054942  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 43916361 - 43916398
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  43916361 acacctcacaaattgaggtgtaccggtactcctgcttc 43916398  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 1845089 - 1845125
Alignment:
Q  119 cacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  1845089 cacctcacaaattgaggtgtaccggtactcctgcttc 1845125  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 6804023 - 6804052
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  6804023 acacctcataaattgaggtgtaccggtact 6804052  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 12801497 - 12801468
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  12801497 acacctcataaattgaggtgtaccggtact 12801468  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 30777287 - 30777323
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgctt 154  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  30777287 acacctcataaattgaggtgtaccgatactcctgctt 30777323  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 4491247 - 4491218
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  4491247 acacctcataaattgaggtgtaccggtact 4491218  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 19527115 - 19527078
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  19527115 acacctcacaaattgaggtgtaccggtactcctgcttc 19527078  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 39103552 - 39103589
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  39103552 acacctcacaaattgaggtgtaccggtactcctgcttc 39103589  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 53973471 - 53973508
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  53973471 acacctcacaaattgaggtgtaccggtactcctgcttc 53973508  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 19627977 - 19627949
Alignment:
Q  120 acctcataaattgaggtgtaccggtactt 148  Q
    |||||||||||||||||||||||||||||    
T  19627977 acctcataaattgaggtgtaccggtactt 19627949  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 39953609 - 39953637
Alignment:
Q  127 aaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||||||||||||||||||||||||    
T  39953609 aaattgaggtgtaccggtacttctgcttc 39953637  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 52776464 - 52776493
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  52776464 acacctcataaattgaggtgtaccggtact 52776493  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 29698337 - 29698373
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgctt 154  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  29698337 acacctcacaaattgaggtgtaccggtactcctgctt 29698373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 12071545 - 12071516
Alignment:
Q  118 acacctcataaattgaggtgtaccggtact 147  Q
    ||||||||||||||||||||||||||||||    
T  12071545 acacctcataaattgaggtgtaccggtact 12071516  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 15362484 - 15362521
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  15362484 acaccttataaattgaggtgtaccggtactcctgcttc 15362521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 41555446 - 41555483
Alignment:
Q  118 acacctcataaattgaggtgtaccggtacttctgcttc 155  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  41555446 acacctcacaaattgaggtgtaccggtactcctgcttc 41555483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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