View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_6 (Length: 470)
Name: NF14359_high_6
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 246 - 389
Target Start/End: Original strand, 4096042 - 4096183
Alignment:
| Q |
246 |
atgtctttattgacaccttcttcttttcttttgatatgcagtcactgtccaacagtattgaaggcggaaccaaatggttggtcaacaaagtaaaaggttt |
345 |
Q |
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| T |
4096042 |
atgtctttattgacaccttcttcttttgatat--tatgcagtcactgtccaacagtattgaaggcggaaccaaatggttggtcaacaaagtaaaaggttt |
4096139 |
T |
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| Q |
346 |
gtatttcctattgccatatgttgctcaaacatttatcttttcaa |
389 |
Q |
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| T |
4096140 |
ctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 4095708 - 4095774
Alignment:
| Q |
77 |
aattaggtcaccatcttagacataatgacgagtaggaccgtaaacttgtactttagaggaacatttat |
144 |
Q |
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| T |
4095708 |
aattaggtcaccatcttagacataatgacgagtagga-cgtaaacttgtactttagaggaacatttat |
4095774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4095580 - 4095652
Alignment:
| Q |
1 |
ctccttgtccgtgtagctgggatggtgacttgatgatcggtaccagttcaataaaagcaaggaaaaatgaatatgt |
76 |
Q |
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| T |
4095580 |
ctccttgtccttgtagctgggatggtgacttgat---cggtaccagttcaataaaagcaaggaaaaatgaatatgt |
4095652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 4097263 - 4097319
Alignment:
| Q |
414 |
gaagggaacttaattatttctctttgtaggaaaaaggcagatgccatttccagagtt |
470 |
Q |
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| T |
4097263 |
gaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagtt |
4097319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 25797235 - 25797168
Alignment:
| Q |
285 |
agtcactgtccaacagtattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
352 |
Q |
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| T |
25797235 |
agtcactgtcaagcagcattgaaggaggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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