View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14359_high_8 (Length: 432)
Name: NF14359_high_8
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 32310394 - 32310797
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |
|
|
| T |
32310394 |
aaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcagcaacggcacgttttcgtc |
32310493 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
219 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310494 |
gtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
32310593 |
T |
|
| Q |
220 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32310594 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
32310693 |
T |
|
| Q |
320 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32310694 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaacctcgatgttttgactggaaatcaaggtcaggttcg |
32310793 |
T |
|
| Q |
420 |
tctg |
423 |
Q |
| |
|
|||| |
|
|
| T |
32310794 |
tctg |
32310797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 32786881 - 32786475
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
32786881 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaataatatcagcagcaacggcacgttttcgac |
32786782 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaat---gacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatct |
216 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786781 |
gtttacaatttcaaagaaaatgaatgttcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatct |
32786682 |
T |
|
| Q |
217 |
tttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786681 |
tttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctg |
32786582 |
T |
|
| Q |
317 |
cttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32786581 |
cttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggt |
32786482 |
T |
|
| Q |
417 |
tcgtctg |
423 |
Q |
| |
|
||||||| |
|
|
| T |
32786481 |
tcgtctg |
32786475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 32814089 - 32813686
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
32814089 |
aaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcagcaacggcacgttttcgac |
32813990 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32813989 |
gtttacagcttcaaagccaatgaatgttcaactctctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtaccatctggagcatctttt |
32813890 |
T |
|
| Q |
220 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32813889 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttttgctt |
32813790 |
T |
|
| Q |
320 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32813789 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
32813690 |
T |
|
| Q |
420 |
tctg |
423 |
Q |
| |
|
|||| |
|
|
| T |
32813689 |
tctg |
32813686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 32564426 - 32564023
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |
|
|
| T |
32564426 |
aaccagatccgagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatttcagcagcaacggcacgttttcgtc |
32564327 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
219 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
32564326 |
gtttacagcttcaaagccaatgaacgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagttccatctggagcatttttt |
32564227 |
T |
|
| Q |
220 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32564226 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
32564127 |
T |
|
| Q |
320 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
419 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32564126 |
atgcttcagatgacggatctacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgacttgaaatcaaggtcaggttcg |
32564027 |
T |
|
| Q |
420 |
tctg |
423 |
Q |
| |
|
|||| |
|
|
| T |
32564026 |
tctg |
32564023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 32306261 - 32306667
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
32306261 |
aaccagacccgagtatacctctcgattttttcagtctgatgagactaaactgtcctgactacagtaagaacaatatcaacagcaacggcacgttttcgac |
32306360 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaat---gacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatct |
216 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
32306361 |
gtttacagtttcaaagccagtaaatgctcatcactctagtagtgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatat |
32306460 |
T |
|
| Q |
217 |
tttgacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306461 |
tttgacactcactactatcagagtttgttgagaggaagagggttattgttttctgatcaacagctgatggctcaagagaagactgccagattggtttctg |
32306560 |
T |
|
| Q |
317 |
cttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32306561 |
cttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggt |
32306660 |
T |
|
| Q |
417 |
tcgtctg |
423 |
Q |
| |
|
||||||| |
|
|
| T |
32306661 |
tcgtctg |
32306667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 28221842 - 28222245
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||| ||| |||||| || | ||||||||| |
|
|
| T |
28221842 |
aaccagacccgagtatacctctcgatttcctcagtcagatgaggcaaaactgtcctgacaacaataagaataatgtcatcagcaacggaatgttttcgac |
28221941 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28221942 |
gtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatctttt |
28222041 |
T |
|
| Q |
220 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |
|
|
| T |
28222042 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggcttaagagaagactgccatattggtttttgctt |
28222141 |
T |
|
| Q |
320 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28222142 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
28222241 |
T |
|
| Q |
420 |
tctg |
423 |
Q |
| |
|
|||| |
|
|
| T |
28222242 |
tctg |
28222245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 28214442 - 28214039
Alignment:
| Q |
20 |
aaccagacccaagtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgac |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || | ||||||||| |
|
|
| T |
28214442 |
aaccagacccgagtatacctctcgatttccttagtcagatgaggcaaaactgtcctgacaacaataagaataatgtcagcagcaacggaatgttttcgac |
28214343 |
T |
|
| Q |
120 |
gtttacagtttcaaagccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatctttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28214342 |
gtttacagtttcaaagccaatgaatgttcatcactctaataacaaagggatgtcatacaagcaagcattgtcatctgcagtgtcatctggagcatctttt |
28214243 |
T |
|
| Q |
220 |
gacactcactactatcagagtttgttgagaggaagagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgctt |
319 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
28214242 |
gacactcactactatcagagattgttgagaggaagagggttattgtttgctgatcaacagctgatggctgaagagaagacagccaaattggtttctgctt |
28214143 |
T |
|
| Q |
320 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28214142 |
atgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgatgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcg |
28214043 |
T |
|
| Q |
420 |
tctg |
423 |
Q |
| |
|
|||| |
|
|
| T |
28214042 |
tctg |
28214039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 269 - 423
Target Start/End: Complemental strand, 32793012 - 32792858
Alignment:
| Q |
269 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32793012 |
ctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttat |
32792913 |
T |
|
| Q |
369 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32792912 |
gttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
32792858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 311 - 423
Target Start/End: Complemental strand, 32799638 - 32799526
Alignment:
| Q |
311 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32799638 |
tttctgcttatgcttcagatgacggatcaacctttcggatggatttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaagg |
32799539 |
T |
|
| Q |
411 |
tcaggttcgtctg |
423 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32799538 |
tcaggttcgtctg |
32799526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 254 - 423
Target Start/End: Original strand, 28158816 - 28158985
Alignment:
| Q |
254 |
gagggttattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatgga |
353 |
Q |
| |
|
||||| || |||| ||| |||||||||| |||||| |||||| ||||| |||||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
28158816 |
gagggctactgttcgctaatcaacagctcatggctggagagaacactgctagattgatttctgctaatgcttccgatgacggatcaacctttcggatgga |
28158915 |
T |
|
| Q |
354 |
tttcgcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
423 |
Q |
| |
|
||| |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28158916 |
tttggcaagggtggtgttgaaattgtctaatattgatgttttgactggaaataaaggtcaggttcgtctg |
28158985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 163 - 423
Target Start/End: Original strand, 28177383 - 28177654
Alignment:
| Q |
163 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactcactactatcagagtttgttgagaggaagagggt--- |
259 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||| ||||| |||||| ||||||||| | |||| |||||| || |||||||||||| |
|
|
| T |
28177383 |
aaagtgatgtcaggcatgcaagcgttgtcatctgcagtgtcatcttaagcatcatttgacacttgatgatatccgagtttattaagaggaagaggggagg |
28177482 |
T |
|
| Q |
260 |
--tattgtttgctgatcaacagctgatggctcaagagaagactgccagattggtttctgcttatgcttcagatgacggatcaacctttcggatggatttc |
357 |
Q |
| |
|
|| |||| ||| ||||||||||||||||| ||||| | ||| || ||| |||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28177483 |
gctactgttcgctaatcaacagctgatggctggagagagcagtgctaggttgatttctgctaatgcttccgatgacggatcaacctttcggatggatttt |
28177582 |
T |
|
| Q |
358 |
gcaagggttatgttg------aaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
423 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28177583 |
gcaagggtggtgttggagttcaaattgtctaatcttgatgttttgactggaaatcaaggtcaggttcgtctg |
28177654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 32317376 - 32317567
Alignment:
| Q |
35 |
tacctctcgattttctcagtcagatgaggctaaactgtcctgacaacagtaagaacaatatcagcagcaatggcacgttttcgacgtttacagtttcaaa |
134 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||| ||||||||||||| | |||| |||||||||| ||| | || ||||||||| ||| ||||||||| |
|
|
| T |
32317376 |
tacctctcgattttctaagtcatatgaggcaaaattgtcctgacaacaattagaataatatcagcaacaacagtacattttcgacggttatagtttcaaa |
32317475 |
T |
|
| Q |
135 |
gccaatgaatgttcatcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactca |
227 |
Q |
| |
|
|||||| ||||| |||||||||||| | |||||||| |||||| |||||| ||||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
32317476 |
gccaattaatgtccatcactctaataataaagggatatcatacgcgcaagctttgtcatatgcagtgccatct-taacatcttttgacactca |
32317567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 28161723 - 28161788
Alignment:
| Q |
358 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
423 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28161723 |
gcaaggattgtgttgaaattgtctaatattgatgttttgactggaaatcaaggtcaggtttgtctg |
28161788 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 28171760 - 28171825
Alignment:
| Q |
358 |
gcaagggttatgttgaaattgtctaaccttgatgttttgactggaaatcaaggtcaggttcgtctg |
423 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28171760 |
gcaagggtggtgttgaaattgtctaatgttgatgttttgactggaaatcaaggtcaggttcatctg |
28171825 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 28174653 - 28174703
Alignment:
| Q |
32 |
gtatacctctcgattttctcagtcagatgaggctaaactgtcctgacaaca |
82 |
Q |
| |
|
||||| |||| |||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
28174653 |
gtatagctcttgattttcttagtcagatgaggctaaactgtccagacaaca |
28174703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 28158724 - 28158788
Alignment:
| Q |
163 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactca |
227 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
28158724 |
aaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28158788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 28169293 - 28169357
Alignment:
| Q |
163 |
aaagggatgtcatacatgcaagcattgtcatctgcagtgccatctggagcatcttttgacactca |
227 |
Q |
| |
|
|||| |||||||| |||||||| ||||| ||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
28169293 |
aaagtgatgtcatgcatgcaagagttgtcgtctgcagtgtcatctgaagcatcatttgacactca |
28169357 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 28183155 - 28183206
Alignment:
| Q |
150 |
tcactctaatgacaaagggatgtcatacatgcaagcattgtcatctgcagtg |
201 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
28183155 |
tcactctaacaaaaaagggatgtcatacatggaagcgttgtcatctgcagtg |
28183206 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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