View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_high_9 (Length: 426)
Name: NF14359_high_9
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_high_9 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Complemental strand, 111312 - 110915
Alignment:
| Q |
10 |
ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
111312 |
ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
111213 |
T |
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| Q |
110 |
aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
209 |
Q |
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| T |
111212 |
aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
111113 |
T |
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| Q |
210 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
309 |
Q |
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| T |
111112 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
111013 |
T |
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| Q |
310 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcg |
407 |
Q |
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| T |
111012 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcg |
110915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 20646554 - 20646951
Alignment:
| Q |
10 |
ataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
109 |
Q |
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| T |
20646554 |
ataatattcaccaaacagccgctccttataatctcccagattttacaaaaacacttgcatcaccgaaggaattataagcatcatcaccacataaagacac |
20646653 |
T |
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| Q |
110 |
aaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagt |
209 |
Q |
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| T |
20646654 |
aaaataatccactgtcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaaacaaatttgaaaaccagaacaagc |
20646753 |
T |
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| Q |
210 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
309 |
Q |
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| T |
20646754 |
gttttagagttacatataaatcttaaataagtacaaagtatcattagattgactacaaatattaaaataagctaaaaaacaataataggatatcctataa |
20646853 |
T |
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| Q |
310 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattctccgataatttcctgcg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20646854 |
tctaaagaaaagccaagtagccaatgtgaggtaacttccattgcatcatgactgtgatcttgttgaaaatcgctattattttccgataatttcctgcg |
20646951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 1592 - 1415
Alignment:
| Q |
8 |
agataatactcaccaaacagccgctccttataatctcccagattttacaagaacacttgcatcaccgaaggaattataagcatcatcaccacataaagac |
107 |
Q |
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|||||||| |||||| | ||| |||||||||||||| ||||||||||||| |||||| || || | |||||| |||| |||||||||| || ||||| |
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| T |
1592 |
agataatattcaccacatagcagctccttataatcttccagattttacaaaaacactctcagcagcaaaggaaagataatcatcatcaccgtatgaagac |
1493 |
T |
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| Q |
108 |
acaaaataatccactatcataactattcaagaataacataaaattaagatttatatgaaaccaaatccattgatggaa |
185 |
Q |
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| T |
1492 |
acaacagaacttactgtcataactattgaagaataaaagaaaattaagatttacatgaaaccaaatccattgatggaa |
1415 |
T |
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