View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_10 (Length: 449)
Name: NF14359_low_10
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_10 |
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| [»] scaffold1064 (1 HSPs) |
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| [»] scaffold0085 (1 HSPs) |
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| [»] scaffold1114 (1 HSPs) |
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Alignment Details
Target: scaffold1064 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Complemental strand, 1318 - 903
Alignment:
| Q |
17 |
catagggttagcggcgactttttggttcttccttaatcggtacatttatgtttcaaattctcttcatattcaaatgggaagaacagagagagtttgtcgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1318 |
catagggttagcggcgactttttggttcttccttaatcggtacatttatgtttcaagttctcttcatattcaaatgggaagaacagagagagtttgtcgt |
1219 |
T |
|
| Q |
117 |
gtacaatgtattggaaatcatagcctcttatagtgtgatggtcattaaggtttctattatcccgttaattggtcgtccagacatccattcgtagggttca |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| || || |
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| T |
1218 |
gtacaatgtattggaaatcatagtctcttatagtgtgatggtcattaaggtttctattatcccgttaattggtcgtctagacatctattcatagagtcca |
1119 |
T |
|
| Q |
217 |
tatcacttcaattaaataattaattatcccaatagaaatctaattagtcttaaggctctaaattgataaatagttgctataaattattataaagatattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1118 |
tatcacttcaattaaataattaattatcccaatagaaatctaattagccttaaggctctaaattgataaatagttgatataaattattataaagatattg |
1019 |
T |
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| Q |
317 |
accagcacaactacattgaaatatagttaaataataaaatcttccatcacctaaaactaataagaaacatcattatcataatcactcatgcttagttcaa |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1018 |
accaacacaactacattgaaatatagttaaataataaaatcttccatcacctaaaactaataagaaacatcattatcataattactcatgcttagttcaa |
919 |
T |
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| Q |
417 |
aagtatatagtattatt |
433 |
Q |
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|||||||| |||||||| |
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| T |
918 |
aagtatat-gtattatt |
903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 57 - 329
Target Start/End: Complemental strand, 9237290 - 9237016
Alignment:
| Q |
57 |
tacatttatgtttcaaattctcttcatattcaaatgggaagaacagagagagtttgtcgtgtacaatgtattggaaatcatagcctcttatagtgtgatg |
156 |
Q |
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|||||||||||||||| ||||||| | |||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9237290 |
tacatttatgtttcaagttctctttagattcaaatgggaagaacaaagag--tttgtcgtgtacaatgtattgggaatcatagcctcttatagtgtgatg |
9237193 |
T |
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| Q |
157 |
gtcattaaggtttctattatcccgttaattggtcgtccagacatccattcgtagggttcatatcacttcaattaaataattaattatcccaatagaaatc |
256 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9237192 |
gtcattaaggtttccattatcccgttaattggtcatccagacatccactcatagagtccatatcacttcaattaaataattaattatcccaatagaaata |
9237093 |
T |
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| Q |
257 |
taattagtcttaaggctctaaattgataaatagttgctataaat----tattataaagatattgaccagcacaacta |
329 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
9237092 |
taattagtcttaaggctctaaattgataaatagttgatataaattatatattataaagatattgacccacacaacta |
9237016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 33458201 - 33458271
Alignment:
| Q |
101 |
agagagagtttgtcgtgtacaatgtattggaaatcatagcctcttatagtgtgatggtcattaaggtttct |
171 |
Q |
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|||||||||||| ||||| | ||||||| |||||||||||||||||||| | |||||||||| ||||||| |
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| T |
33458201 |
agagagagtttgccgtgtctagtgtattgaaaatcatagcctcttatagtattatggtcattagggtttct |
33458271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 1077984 - 1077941
Alignment:
| Q |
226 |
aattaaataattaattatcccaa-tagaaatctaattagtctta |
268 |
Q |
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| T |
1077984 |
aattaaataattaattatccaaaatagaaatctaattagtctta |
1077941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 31057989 - 31057924
Alignment:
| Q |
18 |
atagggttagcggcgactt-tttggttcttccttaatcggtacatttatgtttcaaattctcttca |
82 |
Q |
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|||| ||||||||||||| |||||||||||||||| |||||| |||||| |||| ||||||||| |
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| T |
31057989 |
atagagttagcggcgactgatttggttcttccttaaccggtacctttatgcctcaagttctcttca |
31057924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 38272 - 38191
Alignment:
| Q |
123 |
tgtattggaaatcatagcctcttatagtgtgatggtcattaagg-tttctattatcccgttaattggtcgtccagacatcca |
203 |
Q |
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||||||||| | |||| ||||||||||||||||| |||||| || |||||||||| |||||||| |||| || ||||||||| |
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| T |
38272 |
tgtattggagaccataacctcttatagtgtgatgatcattagggttttctattattccgttaatcggtcatctagacatcca |
38191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 268
Target Start/End: Original strand, 18657024 - 18657111
Alignment:
| Q |
181 |
ttaattggtcgtccagacatccattcgtagggttcatatcacttcaattaaataattaattatcccaatagaaatctaattagtctta |
268 |
Q |
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| T |
18657024 |
ttaatgggtcatccagacatccactcatagagtccatattaattaatttaaataattaattatccaaataaaaatctaattagcctta |
18657111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 26509625 - 26509557
Alignment:
| Q |
192 |
tccagacatccattcgtagggttcatatcacttcaattaaataattaattatcccaatagaaatctaat |
260 |
Q |
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| T |
26509625 |
tccaaacatccactcatagagttcatatcaattattttaaataattaattatccaaatagaaatctaat |
26509557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 20500063 - 20500018
Alignment:
| Q |
37 |
tttggttcttccttaatcggtacatttatgtttcaaattctcttca |
82 |
Q |
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|||||||||||||||| ||||||||||||| |||| ||||||||| |
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| T |
20500063 |
tttggttcttccttaaccggtacatttatgcctcaagttctcttca |
20500018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1114 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1114
Description:
Target: scaffold1114; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 931 - 887
Alignment:
| Q |
101 |
agagagagtttgtcgtgtacaatgtattggaaatcatagcctctt |
145 |
Q |
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| T |
931 |
agagagagtttgtcgtgtacagtgtattggggaccatagcctctt |
887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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