View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_13 (Length: 425)
Name: NF14359_low_13
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 243 - 415
Target Start/End: Complemental strand, 12957733 - 12957561
Alignment:
| Q |
243 |
gaattggtgataaatgataatgttcttactcagtgctaccatcataactccaattggtccatccttctgggacaatggttttggagaggtatgtcttagc |
342 |
Q |
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| T |
12957733 |
gaattggtgataaatgataatgttcttactcagtgctaccatcataactccaattggtccatccttctgggacaatggttttggagaggtatgtcttagc |
12957634 |
T |
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| Q |
343 |
aaaaatgaccctagaataaggacctttagcccttcctaagtacacaccaccaatgccataaactttgcctttg |
415 |
Q |
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| T |
12957633 |
aaaaatgaccctagaataaggacctttagcccttcctaagtacacaccaccaatgccataaactttgcctttg |
12957561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 12957995 - 12957837
Alignment:
| Q |
18 |
tatagccatgctggtaaccaattcttgccatcaatgtaatcaatagatataaatggagcagcttcttcatcactaagttgccttgaccaagaagctcttt |
117 |
Q |
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| T |
12957995 |
tatagccatgctggtaaccaattcttgccatcaatgtaatcaatagatataaatggagcagcttcttcatcactaagttgccttgaccaagaagctcttt |
12957896 |
T |
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| Q |
118 |
tctctgctatggctccaggtccatggcatttatactccgcatggtaaagatgtctatag |
176 |
Q |
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| T |
12957895 |
tctctgctatggctccaggtccatggcatttatactccgcatggtaaagatgtctatag |
12957837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 253 - 415
Target Start/End: Original strand, 14241229 - 14241392
Alignment:
| Q |
253 |
taaatgataatgttcttactcagtgctaccatcataactccaattggtccatcctt-ctgggacaatggttttggagaggtatgtcttagcaaaaatgac |
351 |
Q |
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| T |
14241229 |
taaatgataatgctcttattctgtgctaccgtcataactccaattggtccatcctttctggaacaacggttttgaagaggtatgtcttagcaaaaatgac |
14241328 |
T |
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| Q |
352 |
cctagaataaggacctttagcccttcctaagtacacaccaccaatgccataaactttgcctttg |
415 |
Q |
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| T |
14241329 |
cctagaataaggacctttagcccttcctaagtacacaccaccaatgccataaactttgcctttg |
14241392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 14241007 - 14241164
Alignment:
| Q |
18 |
tatagccatgctggtaaccaattcttgccatcaatgtaatcaatagatataaatggagcagcttcttcatcactaagttgccttgaccaagaagctcttt |
117 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14241007 |
tatatccaagctggtaaccaattcttgccatcaatgtaatcaatagatataaatggagcagcttcttcatcactaagctgccttgaccaagaagctcttc |
14241106 |
T |
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| Q |
118 |
tctctgctatggctccaggtccatggcatttatactccgcatggtaaagatgtctata |
175 |
Q |
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| T |
14241107 |
cctgtgttgtggctccaggtccatgacatttatactccgcatggtaaagatgtctata |
14241164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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