View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_low_15 (Length: 415)

Name: NF14359_low_15
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_low_15
NF14359_low_15
[»] chr1 (3 HSPs)
chr1 (35-231)||(23314873-23315069)
chr1 (40-228)||(39208872-39209062)
chr1 (40-228)||(50445989-50446179)
[»] chr3 (6 HSPs)
chr3 (35-228)||(17712549-17712742)
chr3 (35-228)||(19013806-19013999)
chr3 (130-194)||(7237778-7237842)
chr3 (133-207)||(32391450-32391524)
chr3 (133-207)||(22513948-22514022)
chr3 (155-200)||(37508288-37508333)
[»] chr5 (3 HSPs)
chr5 (232-322)||(6988682-6988769)
chr5 (130-194)||(42838128-42838192)
chr5 (133-218)||(31698259-31698344)
[»] chr4 (1 HSPs)
chr4 (133-207)||(8973001-8973075)
[»] chr6 (1 HSPs)
chr6 (130-194)||(22501880-22501944)
[»] chr7 (3 HSPs)
chr7 (142-227)||(11604889-11604974)
chr7 (130-194)||(24768349-24768413)
chr7 (148-200)||(36962986-36963038)
[»] chr2 (1 HSPs)
chr2 (148-200)||(16767895-16767947)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 23315069 - 23314873
Alignment:
Q  35 tagcaagagggggttggaagaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 134  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23315069 tagcaagagggggttggaggaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 23314970  T
Q  135 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcc 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23314969 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattttcc 23314873  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 39208872 - 39209062
Alignment:
Q  40 agagggggttggaagaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatcca--aaattccaatttta 137  Q
    |||||| |||||| ||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||     ||||||||||||||    
T  39208872 agagggtgttggaggaggaagagggtaaagagagaatgagaacagagttatgtgagattgagaaagaatgaaaaaacagatatttgaaattccaatttta 39208971  T
Q  138 ccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 228  Q
    ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39208972 ccccttgttttttaacaaaattatagagatgtcatccacataggcaggtgtacaagaatggtattgaaaagggtgtgtctaccaataattt 39209062  T

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Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 40 - 228
Target Start/End: Complemental strand, 50446179 - 50445989
Alignment:
Q  40 agagggggttggaagaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatcca--aaattccaatttta 137  Q
    |||||| |||||| ||||||||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||||     ||||||||||||||    
T  50446179 agagggtgttggaggaggaagagggtaaagagagaatgagaacagagttttgtgagattgagaaagaatgaaaaaacagatatttgaaattccaatttta 50446080  T
Q  138 ccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 228  Q
    ||| ||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50446079 ccccttgttttttaacaaaattatagagatgtcatccacataggcaggtgtacaagaatggtattgaaaagggtgtgtctaccaataattt 50445989  T

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Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 17712742 - 17712549
Alignment:
Q  35 tagcaagagggggttggaagaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17712742 tagcaagagggggttggaggaggaagagggtaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagattcaaaattccaatt 17712643  T
Q  135 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17712642 ttacccttttctttttaacaaaattacagagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 17712549  T

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Target: chr3; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 19013999 - 19013806
Alignment:
Q  35 tagcaagagggggttggaagaggaagagggcaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagatccaaaattccaatt 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19013999 tagcaagagggggttggaggaggaagagggtaaagagagaacgagaacagagttctctgagattgagaaagaatgaaaaaacagattcaaaattccaatt 19013900  T
Q  135 ttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 228  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19013899 ttacccttttctttttaacaaaattacagagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataattt 19013806  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 7237778 - 7237842
Alignment:
Q  130 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 194  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  7237778 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 7237842  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 32391524 - 32391450
Alignment:
Q  133 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaa 207  Q
    |||| ||| |||||||||||||||||||||||| |||||||||  | |||||||||||||| | |||||||||||    
T  32391524 ttttgccccttgctttttaacaaaattacaaagttgccatccatgttggcaggtgtacaaggaaggtattgaaaa 32391450  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 22514022 - 22513948
Alignment:
Q  133 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaa 207  Q
    |||| ||| |||||||||||||||||||||||| |||||||||  | ||||||||||||||   |||||||||||    
T  22514022 ttttgccccttgctttttaacaaaattacaaagttgccatccatgttggcaggtgtacaagggaggtattgaaaa 22513948  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37508288 - 37508333
Alignment:
Q  155 aaattacaaagatgccatccacataggcaggtgtacaagaatggta 200  Q
    ||||||||||  |||||||||||| ||||||||||||||| |||||    
T  37508288 aaattacaaaactgccatccacatgggcaggtgtacaagagtggta 37508333  T

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Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 232 - 322
Target Start/End: Complemental strand, 6988769 - 6988682
Alignment:
Q  232 caaggtataggggaagccacgttgctaaaagctttggaaaacgtaatcaaaataacaaatagtaataaaataagggaaatgttaacttgta 322  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||    
T  6988769 caaggtataggggaagccacgttgctaaaagcttcggaaaacgtaatcaaaataacaaa---taataaaataaggaaaatgttaacttgta 6988682  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 42838192 - 42838128
Alignment:
Q  130 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 194  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  42838192 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 42838128  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 31698344 - 31698259
Alignment:
Q  133 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtcta 218  Q
    ||||||||||  ||||||||||| | ||||||  |||||||||||| |||| ||||| ||||  ||| | ||||| ||||||||||    
T  31698344 ttttacccttaactttttaacaacactacaaaattgccatccacatgggcatgtgtataagagaggtgtagaaaatggtatgtcta 31698259  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 8973075 - 8973001
Alignment:
Q  133 ttttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaa 207  Q
    |||| ||| |||||||||||||||||||||||| |||||||||| | |||||||||||||| | |||||||||||    
T  8973075 ttttgccccttgctttttaacaaaattacaaagttgccatccacgttggcaggtgtacaaggaaggtattgaaaa 8973001  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22501944 - 22501880
Alignment:
Q  130 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 194  Q
    ||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  22501944 caattttaccccttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 22501880  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 11604974 - 11604889
Alignment:
Q  142 ttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggtattgaaaagggtatgtctaccaataatt 227  Q
    ||||||| ||||||||||||| ||||||| | |||||||||| ||||| || ||||||||||||||  || |||| ||||||||||    
T  11604974 ttgctttataacaaaattacagagatgccttgcacataggcaagtgtataacaatggtattgaaaaaagtgtgtcaaccaataatt 11604889  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 24768413 - 24768349
Alignment:
Q  130 caattttaccctttgctttttaacaaaattacaaagatgccatccacataggcaggtgtacaaga 194  Q
    ||||||||||  || ||||||||||||||||||||| |||||||||||| |||||||||| ||||    
T  24768413 caattttacctcttcctttttaacaaaattacaaagctgccatccacatgggcaggtgtataaga 24768349  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 36962986 - 36963038
Alignment:
Q  148 tttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggta 200  Q
    |||||| ||||||||||  || ||||||||| ||||||||||||||| |||||    
T  36962986 tttaacgaaattacaaaactgtcatccacatgggcaggtgtacaagagtggta 36963038  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 16767947 - 16767895
Alignment:
Q  148 tttaacaaaattacaaagatgccatccacataggcaggtgtacaagaatggta 200  Q
    |||||| ||||||||||  |||||||||||| ||||||||||||||| |||||    
T  16767947 tttaacgaaattacaaaactgccatccacatgggcaggtgtacaagagtggta 16767895  T

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