View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14359_low_17 (Length: 400)
Name: NF14359_low_17
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 15736717 - 15736344
Alignment:
| Q |
17 |
cattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736717 |
cattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagt |
15736618 |
T |
|
| Q |
117 |
gcatatccaagagtccaaccaacattatcttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaaga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15736617 |
gcatatccaagagtccaaccaacattatcttgtatgtagactaagacagaatttgcaagaagagtcccaaagacgatgctgaacatccaccaattgaaga |
15736518 |
T |
|
| Q |
217 |
atgagagtttatgtttcttgtcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctag |
316 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15736517 |
atgagagtttatgtttcttctcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctag |
15736418 |
T |
|
| Q |
317 |
agtgtagagtgcaccatagaacacaactagctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15736417 |
agtgtagagtgcaccatagaacacaactagctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
15736344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 15728943 - 15728570
Alignment:
| Q |
17 |
cattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagt |
116 |
Q |
| |
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||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
15728943 |
cattttagtaaagggacttcctgtaggtaatttatgtctatagaatggtgtgcctgccaaaaatattatgatagatattgcaagtccaagagttggaagt |
15728844 |
T |
|
| Q |
117 |
gcatatccaagagtccaaccaacattatcttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaaga |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||| ||| || |||| || ||||||||||||||||| ||||||| |
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|
| T |
15728843 |
gcatacccaagagtccaaccaacattatcttgtatgtagactaaaactgaatttgcaaaaagggttccaatgaagatgctgaacatccaccagttgaaga |
15728744 |
T |
|
| Q |
217 |
atgagagtttatgtttcttgtcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctag |
316 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
15728743 |
atgagagtttgtgtttcttctcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttaggttttgttccacctgttcccactgctag |
15728644 |
T |
|
| Q |
317 |
agtgtagagtgcaccatagaacacaactagctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
390 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
15728643 |
aatgtagagtgcaccatagaacacaactagctgtaatgtagaagcttccttgcattttgtcacatccatttcat |
15728570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 29 - 390
Target Start/End: Complemental strand, 15779036 - 15778675
Alignment:
| Q |
29 |
gggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagtgcatatccaaga |
128 |
Q |
| |
|
||||||||||| | | ||||| ||||||||||| ||||||||||||| ||||| ||||| |||||| ||| |||| ||| |||| ||||| |||||| |
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|
| T |
15779036 |
gggactccctgaaagcaatttgtgtctatagaaaggtgtgcctgccaagaatgtgatgattgatattgcaaatccagttgtttgaagagcataaccaaga |
15778937 |
T |
|
| Q |
129 |
gtccaaccaacattatcttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaagaatgagagtttat |
228 |
Q |
| |
|
||||||| ||||||||||||||||| |||| || | ||||| || | |||||| ||||||| | ||||||||||||||||||||||||| ||| |
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|
| T |
15778936 |
gtccaactcacattatcttgtatatacactataactgtgaatgcaaatagtgacccaaaaacaatgcaggacatccaccaattgaagaatgagagcttaa |
15778837 |
T |
|
| Q |
229 |
gtttcttgtcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctagagtgtagagtgc |
328 |
Q |
| |
|
|| ||| | ||||| |||||| |||||||| || ||||||||||| ||||||||||||| || |||||||||||||||||||||| | ||||||| || |
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|
| T |
15778836 |
gtcccttctgttttgggtcaaaatcatcaaactggtcagcaccaatggtggaaatgttaggtttggttccacctgttcccactgctataatgtagagggc |
15778737 |
T |
|
| Q |
329 |
accatagaacacaactagctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
390 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||| |
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|
| T |
15778736 |
aacatagaacacaactagctgtagtgtggtagcttctttacactttgtcacatccatttcat |
15778675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 390
Target Start/End: Complemental strand, 15754671 - 15754326
Alignment:
| Q |
45 |
aatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagtgcatatccaagagtccaaccaacattat |
144 |
Q |
| |
|
||||| |||||||| || ||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||| |
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|
| T |
15754671 |
aatttgtgtctataaaaaggtgtgcctgccaagaatgtgatgattgatattgcaagtccaagagttggaagagcataaccaagagtccaacccacattat |
15754572 |
T |
|
| Q |
145 |
cttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaagaatgagagtttatgtttcttgtcttttgt |
244 |
Q |
| |
|
|||| || || |||| || | ||||| || | |||||||||||||| |||||||||| |||||||||||||| ||| || || ||||| | |
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| T |
15754571 |
cttgaatgtacactataactgtgaatgcaaatagtgacccaaagacaatgcaagacatccaccagttgaagaatgagagcttaagtgatttttctttagg |
15754472 |
T |
|
| Q |
245 |
gtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctagagtgtagagtgcaccatagaacacaact |
344 |
Q |
| |
|
|||||| || ||||| || ||||||||||| || |||||||| | || || ||||||||||||||||||| | ||||||||||| |||||||||||||| |
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|
| T |
15754471 |
gtcaaaatcgtcaaactggtcagcaccaatggttgaaatgttgggtttggtcccacctgttcccactgctataatgtagagtgcaacatagaacacaact |
15754372 |
T |
|
| Q |
345 |
agctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
390 |
Q |
| |
|
|| | ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15754371 |
agtgtttgtgtggaagcttccttgcattttgtaacatccatttcat |
15754326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 45 - 390
Target Start/End: Complemental strand, 15765355 - 15765010
Alignment:
| Q |
45 |
aatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagtgcatatccaagagtccaaccaacattat |
144 |
Q |
| |
|
||||| |||||||| ||| |||| |||||||| ||||| ||||| |||||| |||| |||| |||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
15765355 |
aatttgtgtctataaaatggtgttcctgccaagaatgtgatgattgatattgcaaggccaattgttggaagagcataaccaagagtccaactcacattat |
15765256 |
T |
|
| Q |
145 |
cttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaagaatgagagtttatgtttcttgtcttttgt |
244 |
Q |
| |
|
|||||| ||| |||| | | | ||||| || | ||| | ||||||| | ||||||||||||||||||||||||| ||| || || ||||| | |
|
|
| T |
15765255 |
cttgtacatacactagaattgtaaatgcaaatagtgaccccatgacaatgtaggacatccaccaattgaagaatgagagcttaagtgctttttctttagg |
15765156 |
T |
|
| Q |
245 |
gtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctagagtgtagagtgcaccatagaacacaact |
344 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||||||||| | || |||||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
15765155 |
gtcaaaatcatcaaattggtcagcaccaatggtggaaatgttgggtttggttccacctgttcccactgctaaaatgtagagtgcagtatagaacacaact |
15765056 |
T |
|
| Q |
345 |
agctgtagtgtggaagcttccttgcattttgtcacatccatttcat |
390 |
Q |
| |
|
|| | ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15765055 |
agtgtttgtgtggaagcttccttgcattttgtaacatccatttcat |
15765010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 33412826 - 33413150
Alignment:
| Q |
17 |
cattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaagt |
116 |
Q |
| |
|
|||| ||||||| | |||||||||||| ||||| |||||||| || |||| ||| |||| ||| | ||||| |||||| | | ||| |||||||| | |
|
|
| T |
33412826 |
cattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtgttcctcccaagaatatcatgattgatattgctaatcctagagttggcaaa |
33412925 |
T |
|
| Q |
117 |
gcatatccaagagtccaaccaacattatcttgtatatagactaagacagaatttgcaagaagagtcccaaagacaatgctgaacatccaccaattgaaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||| ||| |||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
33412926 |
gcatatccaagagtccaaccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaaa |
33413025 |
T |
|
| Q |
217 |
atgagagtttatgtttcttgtcttttgtgtcaaactcatcaaattgatcagcaccaatagtggaaatgttagcctttgttccacctgttcccactgctag |
316 |
Q |
| |
|
|||| ||||||||| || ||||| | | ||| ||||||||||| || |||||||| || || ||||| | || |||||||||||||| | |||||| |
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|
| T |
33413026 |
atgaaagtttatgtgatttttctttaggatgaaaatcatcaaattggtctgcaccaatggttgagatgttgggtttggttccacctgttcctattgctag |
33413125 |
T |
|
| Q |
317 |
agtgtagagtgcaccatagaacaca |
341 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
33413126 |
agtgtaaagtgcaccatagaacaca |
33413150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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