View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_18 (Length: 387)
Name: NF14359_low_18
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 40079653 - 40079278
Alignment:
| Q |
1 |
agagagaatttgatattttgggttcaactgaaagtggagaaagtgttataatgcgatacaaacttcctttcttgcgagacatagtggagattcgtagaaa |
100 |
Q |
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| T |
40079653 |
agagagaatttgatattttgggttcaactgaaagtggagaaagtgttctaatgcgatacaaacttcctttcttgcgagacatagtggagattcgtagaaa |
40079554 |
T |
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| Q |
101 |
gagtcattgtacaataaagaaggattcgtcatatctagaggattagtcgacaatccaacccatgtcaatgtcggtgacatgggtacgaaatatggtggag |
200 |
Q |
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| T |
40079553 |
gagtcattgtacaataaagaaggattcgtcatatctagaggattagtcgacaatccaacccatgtcaatgtcggtgacatgggtatgaaatatggtggag |
40079454 |
T |
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| Q |
201 |
ccgagcttgcattatacctatctccaaccaagaggatgtaaaagatttgtgggaagacatcaaggaacaattctcaatcataaacggaccaaggattaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40079453 |
ccgagcttgcattatacctatctccaaccaagaggatgtaaaagatttgtgggaggacatcaaggaacaattctcaatcataaacggaccaaggattaaa |
40079354 |
T |
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| Q |
301 |
caaatcaaggcagagttggaggaatgtcgacaaacaaagatggccatggtggcatattgatattgtggttagttga |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40079353 |
caaatcaaggcagagttggaggaatgtcgacaaacaaagatggccatggtggcatattgatattgtggttaattga |
40079278 |
T |
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