View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_low_19 (Length: 379)

Name: NF14359_low_19
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_low_19
NF14359_low_19
[»] chr3 (18 HSPs)
chr3 (1-365)||(36002250-36002614)
chr3 (47-105)||(36023603-36023661)
chr3 (1-105)||(23351901-23352005)
chr3 (289-345)||(36023375-36023431)
chr3 (176-330)||(23463039-23463193)
chr3 (176-330)||(23439668-23439822)
chr3 (1-100)||(23439874-23439973)
chr3 (236-330)||(23386037-23386131)
chr3 (288-330)||(23447048-23447090)
chr3 (42-100)||(23472409-23472467)
chr3 (288-330)||(23478348-23478390)
chr3 (1-106)||(23386234-23386339)
chr3 (1-106)||(23404608-23404713)
chr3 (236-329)||(23472204-23472297)
chr3 (288-328)||(23498829-23498869)
chr3 (236-330)||(23404408-23404502)
chr3 (288-330)||(23453818-23453860)
chr3 (42-106)||(23463239-23463303)
[»] chr2 (2 HSPs)
chr2 (160-360)||(16337574-16337774)
chr2 (160-360)||(16121394-16121594)
[»] chr4 (2 HSPs)
chr4 (160-340)||(12897074-12897254)
chr4 (45-106)||(12896971-12897032)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 36002614 - 36002250
Alignment:
Q  1 aactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36002614 aactgaagttgttgaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcatttaaaagcatgaccaacttaagatatctt 36002515  T
Q  101 catatccttaatagtttacataatatatttctgacaaatggaagaaatgaaggatccattgtgcaccttcatgaaggtcttgagtggttgtctgataaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002514 catatccttaatagtttacataatatatttctgacaaatggaagaaatgaaggatccattgtgcaccttcatgaaggtcttgagtggttgtctgataaat 36002415  T
Q  201 tgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36002414 tgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaa 36002315  T
Q  301 aaagctatgggatggaattcaggtacaaattaattaatgtgtttgtatatacttgttatttttat 365  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36002314 aaagctatgggatggaattcaggtacaaattaattaatgtgtttatatatacttgttatttttat 36002250  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 36023661 - 36023603
Alignment:
Q  47 gatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatat 105  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  36023661 gatctatacttgacctctgattcctttaaaagcatgaccaacttaagatgtcttcatat 36023603  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 23352005 - 23351901
Alignment:
Q  1 aactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    ||||||||||||||||| |||| | ||||||| |   ||  ||||||||||||||||||  |||| |||||||||||| ||||| |||||||||||||||    
T  23352005 aactgaagttgtggaaggtataatattcgatagtacagaagttggggatctatacttgaagtctgattcctttaaaaggatgacaaacttaagatatctt 23351906  T
Q  101 catat 105  Q
     ||||    
T  23351905 gatat 23351901  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 36023431 - 36023375
Alignment:
Q  289 tagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttg 345  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36023431 tagcaagctaaaaaagctttgggatggaattcaggtacaaattaattaatgtgtttg 36023375  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 23463193 - 23463039
Alignment:
Q  176 ggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgctgaaaatcttgtacaac 275  Q
    |||||||||||| | ||||||||||||||||| |||  ||||| |  || |   ||| | ||||||||| ||| ||| ||||||||||  |||||| | |    
T  23463193 ggtcttgagtggatttctgataaattgaggtatcttctatgggtaagatactgtcttgagtctttgccatcaaccttttgtgctgaaatgcttgtatatc 23463094  T
Q  276 ttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    || ||||||   ||||||| ||||||||||| ||||||||| |||||||||||||    
T  23463093 tttgcatgagtcatagcaagcttaaaaagctctgggatggagttcaggtacaaat 23463039  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 330
Target Start/End: Complemental strand, 23439822 - 23439668
Alignment:
Q  176 ggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgctgaaaatcttgtacaac 275  Q
    ||||| |||||| | ||||||||||||||||||||| |||||||   ||     ||| | ||||| ||| ||| ||| ||||||||||  |||||| | |    
T  23439822 ggtctcgagtggctttctgataaattgaggtaccttcaatgggagggatattgtctttagtcttttccatcaaacttttgtgctgaaatgcttgtagagc 23439723  T
Q  276 ttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||||||  ||||||| |||||||| || || |||||| |||||||||||||    
T  23439722 ttagcatgactcatagcaagcttaaaaatctctgagatggagttcaggtacaaat 23439668  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23439973 - 23439874
Alignment:
Q  1 aactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    ||||||||||||||||| |||| | ||||||| |   ||  ||||||||||||||||||  |||| |||||||| ||| ||| | |||||||||||||||    
T  23439973 aactgaagttgtggaaggtataatattcgatactacggaagttggggatctatacttgaagtctgattcctttagaaggatggcaaacttaagatatctt 23439874  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 23386131 - 23386037
Alignment:
Q  236 tctttgccagcaagcttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||||| ||| ||| ||||||||||  |||||| | ||| ||||||   | ||||| ||||||||||| ||||||||| |||||||||||||    
T  23386131 tctttgccatcaaccttttgtgctgaaatgcttgtagagctttgcatgaatcaaagcaagcttaaaaagctctgggatggagttcaggtacaaat 23386037  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 23447090 - 23447048
Alignment:
Q  288 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  23447090 atagcaagcttaaaaagctatgggatggagttcaggtacaaat 23447048  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 23472467 - 23472409
Alignment:
Q  42 ttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    ||||||||||||||||||  |||| |||||||| ||| ||||| |||||||||||||||    
T  23472467 ttggggatctatacttgaagtctgattcctttagaaggatgacaaacttaagatatctt 23472409  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 23478390 - 23478348
Alignment:
Q  288 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  23478390 atagcaagcttaaaaagctatgggatggagttcaggtacaaat 23478348  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23386339 - 23386234
Alignment:
Q  1 aactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    ||||||||||||||||| |||| | || |||| |   ||  ||||||||||||||||||  |||| |||||||| ||| ||||| || ||||||||||||    
T  23386339 aactgaagttgtggaaggtataatattggatagtacggaagttggggatctatacttgaagtctgattcctttagaaggatgacaaatttaagatatctt 23386240  T
Q  101 catatc 106  Q
     |||||    
T  23386239 aatatc 23386234  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23404713 - 23404608
Alignment:
Q  1 aactgaagttgtggaagttatatttttcgatatttgtgactttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatctt 100  Q
    ||||||||||||||||| |||| | ||||||| |   ||  |||||||| | |||||||  |||| |||||||| ||| ||||| |||||||||||||||    
T  23404713 aactgaagttgtggaaggtataatattcgatagtacggatgttggggatatttacttgaagtctgattcctttagaaggatgacaaacttaagatatctt 23404614  T
Q  101 catatc 106  Q
     |||||    
T  23404613 aatatc 23404608  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 23472297 - 23472204
Alignment:
Q  236 tctttgccagcaagcttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaa 329  Q
    ||||| ||| ||| ||| ||||||||||  |||||| | |||  ||||||  ||||||| ||||||||||| ||||||||| ||||||||||||    
T  23472297 tcttttccatcaaacttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaa 23472204  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 23498869 - 23498829
Alignment:
Q  288 atagcaaacttaaaaagctatgggatggaattcaggtacaa 328  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  23498869 atagcaagcttaaaaagctatgggatggagttcaggtacaa 23498829  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 23404502 - 23404408
Alignment:
Q  236 tctttgccagcaagcttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||||| |||  || ||||||||||  |||||| | ||| ||||| |  | ||||| ||||||||||| ||||||||| |||||||||||||    
T  23404502 tctttgccatcaactttttgtgctgaaatgcttgtagagctttgcatggctcaaagcaagcttaaaaagctctgggatggagttcaggtacaaat 23404408  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 23453860 - 23453818
Alignment:
Q  288 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 330  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||    
T  23453860 atagcaagcttaaaaagctctgggatggagttcaggtacaaat 23453818  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 23463303 - 23463239
Alignment:
Q  42 ttggggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatatc 106  Q
    |||||||| | |||||||  |||| |||||||| ||| ||||| || ||||||||||||||||||    
T  23463303 ttggggatatttacttgaagtctgattcctttagaaggatgacaaatttaagatatcttcatatc 23463239  T

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Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 160 - 360
Target Start/End: Original strand, 16337574 - 16337774
Alignment:
Q  160 tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgct 259  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| | ||||||||| ||| ||| ||||||    
T  16337574 tgtgcatctccaagaaggtcttgagtggttgtctgataaattgaggtaccttcattgggaatcatttccacttgaatctttgccatcaaccttttgtgct 16337673  T
Q  260 gaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttgtatatacttgttat 359  Q
     |||| ||||||||||||||||||||| ||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  16337674 caaaaccttgtacaacttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaattaattaatgtgtttttatatacttgttat 16337773  T
Q  360 t 360  Q
    |    
T  16337774 t 16337774  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 160 - 360
Target Start/End: Complemental strand, 16121594 - 16121394
Alignment:
Q  160 tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgct 259  Q
    |||||| || || |||||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||| | ||||||||| ||| ||| ||| ||    
T  16121594 tgtgcatctccaagaaggtcttgagtggttgtctgataaattgagctaccttcattgggaatcatttccacttgagtctttgccatcaaccttttgtcct 16121495  T
Q  260 gaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttgtatatacttgttat 359  Q
     |||| |||||| |||||||||||||| ||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  16121494 caaaagcttgtagaacttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaattaattaatgtgtttttatatacttgttat 16121395  T
Q  360 t 360  Q
    |    
T  16121394 t 16121394  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 160 - 340
Target Start/End: Original strand, 12897074 - 12897254
Alignment:
Q  160 tgtgcaccttcatgaaggtcttgagtggttgtctgataaattgaggtaccttaaatgggaatcattcccacttaattctttgccagcaagcttctgtgct 259  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| ||||| | |||||| ||||||||||| | ||||||||| ||| ||| |||||     
T  12897074 tgtgcacctccttgaaggtcttgaatggttgtctgataaattgaggcacctttattgggaagcattcccacttgagtctttgccatcaaccttttgtgcc 12897173  T
Q  260 gaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgt 340  Q
    |||   ||||||||||||||||||  | ||||||| ||||||||||| ||| ||| |||||||||||| ||| ||||||||    
T  12897174 gaatggcttgtacaacttagcatgcgccatagcaagcttaaaaagctttggaatgaaattcaggtacacatttattaatgt 12897254  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 12896971 - 12897032
Alignment:
Q  45 gggatctatacttgagctctgcttcctttaaaagcatgaccaacttaagatatcttcatatc 106  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||    
T  12896971 gggatctatacttgagctctgattcatttaaaaacatgaccaacttaagatatcttcatatc 12897032  T

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