View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_2 (Length: 591)
Name: NF14359_low_2
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Complemental strand, 1349771 - 1349213
Alignment:
| Q |
13 |
atacttcctattagaatttgtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatg |
112 |
Q |
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| T |
1349771 |
atacttcctattagaatttgtgagaagaacatttgaattccacctgatatgaacaaaactcttctacctagtttatcaactatgagcattgatatgaatg |
1349672 |
T |
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| Q |
113 |
ttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaat |
212 |
Q |
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| T |
1349671 |
ttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatggttaaaaataggattggagcataaaaggaaat |
1349572 |
T |
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| Q |
213 |
gacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttg |
312 |
Q |
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| T |
1349571 |
gacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattttctttgtaagatattcttaaatggatgtttg |
1349472 |
T |
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| Q |
313 |
atagaatttgacatgatacttgcttcaataaggtcctcaaattcttgttgaacatcatgtgtgcctcttatggattgcagcattaacttagctttttgat |
412 |
Q |
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| T |
1349471 |
atagaatttgacatgatacttgcttcaataaggtcctcaaattcttgttgaacatcatgtgtgcctcttattgattgcagcattaacttagctttttgat |
1349372 |
T |
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| Q |
413 |
ggtttttgctgttttggattatgctgtttggtgtttctgggaggaaaaatgctcctaaagtgaggattgtagctggaactgctgccatggctagagaaat |
512 |
Q |
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| T |
1349371 |
ggtttttgctgttttgaattatgctgtttggtgtttctggaaggaaaaatgctcctaaagtgaggattgtagctggaactgctgccatggctagagaaat |
1349272 |
T |
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| Q |
513 |
tcgccatccccaaccgtctttgatcttttctgtaccaaagttgattaaatttgcagata |
571 |
Q |
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| T |
1349271 |
tcgccatccccaaccgtctttgatcttttctgtaccaaagttgattaaatttgctgata |
1349213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 82 - 286
Target Start/End: Complemental strand, 1356659 - 1356455
Alignment:
| Q |
82 |
agtttatcaactatgagcattgatatgaatgttgaagtagtacctacaatccctaccataactgcagataaaagtgaagcactttcacctaatccaatgg |
181 |
Q |
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| T |
1356659 |
agtttatctactatgaacattgatatgaacgttgaaccagtacctactatgcctgtcatgacagatgatagaagcgatgcactttctcctaacccaattg |
1356560 |
T |
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| Q |
182 |
ttaaaaataggattggagcataaaaggaaatgacattgattcctgtgaattgttggaaaaaaggtatagctattgccataacaagttgaggtctatattt |
281 |
Q |
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| T |
1356559 |
ttctgaaaagtaaaggggcatagaaagcgatgacattgatccctgtcacttgttggaaaaatggtattgctattgccattacaagttgaggtctatatct |
1356460 |
T |
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| Q |
282 |
tcttt |
286 |
Q |
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||||| |
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| T |
1356459 |
tcttt |
1356455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 406 - 569
Target Start/End: Complemental strand, 1356332 - 1356169
Alignment:
| Q |
406 |
ttttgatggtttttgctgttttggattatgctgtttggtgtttctgggaggaaaaatgctcctaaagtgaggattgtagctggaactgctgccatggcta |
505 |
Q |
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|||||||||| || | || ||||||||| ||| || || |||||||| ||||||| ||| |||| || |||| | |||||||||||||||||||||| |
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| T |
1356332 |
ttttgatggtcttgggtggtttggattaggctattgggagtttctggtaggaaaagtgcacctagtgttaggaaagaggctggaactgctgccatggcta |
1356233 |
T |
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| Q |
506 |
gagaaattcgccatccccaaccgtctttgatcttttctgtaccaaagttgattaaatttgcaga |
569 |
Q |
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| || | ||||| ||||||||| ||| ||||||||||| ||| ||||||||| ||| ||||| |
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| T |
1356232 |
gggatacgcgccaaccccaaccgccttcaatcttttctgttccatagttgattagattagcaga |
1356169 |
T |
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Back To:
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