View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_20 (Length: 370)
Name: NF14359_low_20
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_20 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 31 - 370
Target Start/End: Complemental strand, 21538158 - 21537820
Alignment:
| Q |
31 |
agaagtattgtcaatgacttcaagttgccaagaccaattggttctatattggaaaaattggggatttgagaaagaccctgcacatattaagggttaatgg |
130 |
Q |
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| T |
21538158 |
agaagtattgtcaatgacttcaagttggtaaaaccaatcggttctatattgggaaaattggggacttgagaaagaccctgcacatattaagggttaatgc |
21538059 |
T |
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| Q |
131 |
ccacacaatcattagtgagtatttgaagtaaataataaatgctaatattatagatttgataagaaataggagcacattaatttcaagtacctcaagactc |
230 |
Q |
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| T |
21538058 |
ccacacaatctttagtgagtatttaaagtagataataaatgctaataatatagatttgataagacataggagcaaactaatttcaa-tacctcaagacta |
21537960 |
T |
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| Q |
231 |
ttccaatgaagtttcaatgagcgtacattactgatccttttcaacatgtttttaaagatctctacaagttttggattaggtagattccacacaacaatga |
330 |
Q |
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| T |
21537959 |
ttccaataaagtttcaatgagcgtacattactgatccttttcaacatgtttataaagatctctacaagttttggattaggtagataccacaaaacagtga |
21537860 |
T |
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| Q |
331 |
tgcttgcatcttcaataaaatccatgttgtgctcatagac |
370 |
Q |
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| T |
21537859 |
tgcttgcattttcaataaaatccatgttgtgctcaaagac |
21537820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 178 - 370
Target Start/End: Complemental strand, 21522303 - 21522111
Alignment:
| Q |
178 |
ttatagatttgataagaaataggagcacattaatttcaagtacctcaagactcttccaatgaagtttcaatgagcgtacattactgatccttttcaacat |
277 |
Q |
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| T |
21522303 |
ttatagatttgataagaaataggagcacactaatttcaagtacctcaagactcttccaatgaagtttcaatgagcgtacattactgatccttttcaacat |
21522204 |
T |
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| Q |
278 |
gtttttaaagatctctacaagttttggattaggtagattccacacaacaatgatgcttgcatcttcaataaaatccatgttgtgctcatagac |
370 |
Q |
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| T |
21522203 |
gtttttaaagatctctacaagttttggattaggtagattccacacaacaatgatgcttgcatcttcaataaaatccatgttgtgctcatagac |
21522111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 21522906 - 21522720
Alignment:
| Q |
6 |
cataggtggtaagttatatttgtctagaagtattgtcaatgacttcaagttgccaagaccaattggttctatattggaaaaattggggatttgagaaaga |
105 |
Q |
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| T |
21522906 |
cataggtggtctgttatatttgtctagaagcaccgttaatgacttcaagttgccaagaccaattggttctatattgggaaaattggggatttgagaaaga |
21522807 |
T |
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| Q |
106 |
ccctgcacatattaagggttaatggccacacaatcattagtgagtatttgaagtaaataataaatgctaatattatagatttgataa |
192 |
Q |
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| T |
21522806 |
ccctgcacatattaagggttaatggccacacaatctttagtgagtatttgaagtagataataaatgctaatattatagattggataa |
21522720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 165
Target Start/End: Complemental strand, 20428124 - 20428008
Alignment:
| Q |
47 |
acttcaagttgccaagaccaattggttctatattggaaaaattggggatttgagaaagaccctgcacatattaagggttaatggccacacaatcattagt |
146 |
Q |
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| T |
20428124 |
acttcaatttaccaaaaccagttggtcttatattgggaaaattggggattgaagaaataccctgcacatattaagggttaatg--cacaaatccagtagt |
20428027 |
T |
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| Q |
147 |
gagtatttgaagtaaataa |
165 |
Q |
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| T |
20428026 |
gattatttgaagtaaataa |
20428008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 20425931 - 20425995
Alignment:
| Q |
65 |
caattggttctatattggaaaaattggggatttgagaaagaccctgcacatattaagggttaatg |
129 |
Q |
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| T |
20425931 |
caattggttctatattgggaaaattgaggattgaagaaaaaccctgcacatattaaaggttaatg |
20425995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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