View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_23 (Length: 366)
Name: NF14359_low_23
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 357
Target Start/End: Original strand, 33874401 - 33874742
Alignment:
| Q |
16 |
cattttgaaaatctggctgataagttcttccaagaactccttcaactttggacgataaaccatagaatttgaactgcacctccaaatgagagaaacaatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874401 |
cattttgaaaatctggctgataagttcttccaagaactccttcaactttggacgataaaccatagaatttgaactgcacctccaaatgagagaaacaatc |
33874500 |
T |
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| Q |
116 |
atcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgaca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874501 |
atcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgaca |
33874600 |
T |
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| Q |
216 |
ctgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttctgtcatagg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33874601 |
ctgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttccgtcatagg |
33874700 |
T |
|
| Q |
316 |
agagtttaagatggtcaactttgtcatcccaaattgatgatg |
357 |
Q |
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| T |
33874701 |
agagtttcagatggtcaacttcgtcatcccaacttgatgatg |
33874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 33878647 - 33878987
Alignment:
| Q |
17 |
attttgaaaatctggctgataagttcttccaagaactccttcaactttggacgataaaccatagaatttgaactgcacctccaaatgagagaaacaatca |
116 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
33878647 |
attttgaaaatctggctgataagtcctaccaagaactccttcaactttggacgataaaccatagaatttgaactgcacatccaaatgagcaaaacaatca |
33878746 |
T |
|
| Q |
117 |
tcatcgggaatctgatagttatggattctactgtcctccttggtgacaggcaccacattgactgatatttcagcaacttctgggattgtaacgatgacac |
216 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||| |
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| T |
33878747 |
tcatcaggaatctgataattatggattctactgtcctccttggtgacaggcaccacattgacagatatttctgcaacttccgggattgtgaccatgacac |
33878846 |
T |
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| Q |
217 |
tgttctcattcgatgttctctcgactctaagttgattttcctcggattgccatgtagagaggtgacctcctgggattacgagttcctttctgtcatagga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| || || ||||||| ||||| || |
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| T |
33878847 |
cgttctcattcgatgttctctcgactctaagttgattttcctcggattgccacgtagagaggtgaccttcagggatcacaagatcctttccatcataaga |
33878946 |
T |
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| Q |
317 |
gagtttaagatggtcaactttgtcatcccaaattgatgatg |
357 |
Q |
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||| || | ||||||||||| |||||||||||||||||||| |
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| T |
33878947 |
gagcttcaaatggtcaacttcgtcatcccaaattgatgatg |
33878987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 22718236 - 22718388
Alignment:
| Q |
23 |
aaaatctggctgataagttcttccaagaactccttcaactttggacgataaaccatagaatttgaactgcacctccaaatgagagaaacaatcatcatcg |
122 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||||||| || || | | |||||||||| ||||| ||||||||||||| ||||| ||| ||| |
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| T |
22718236 |
aaaatctggctggtaagtccttccaagaacaccttcaactttcgaagacagatcatagaatttaaactgaacctccaaatgagcaaaacagtcactatca |
22718335 |
T |
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| Q |
123 |
ggaatctgatagttatggattctactgtcctccttggtgacaggcaccacatt |
175 |
Q |
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||||| |||||||| ||||||||||| || ||||| ||||||||||| ||||| |
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| T |
22718336 |
ggaatttgatagttgtggattctactatcttccttagtgacaggcacaacatt |
22718388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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