View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_24 (Length: 358)
Name: NF14359_low_24
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_24 |
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| [»] scaffold0054 (5 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 340
Target Start/End: Complemental strand, 38116 - 37798
Alignment:
| Q |
22 |
gggcgaatcgggaataataaacaaatagtgtatgggggagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatc |
121 |
Q |
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| T |
38116 |
gggcgaatcgggaataataaacaaatagtgtatggggcagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatc |
38017 |
T |
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| Q |
122 |
gaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcg |
221 |
Q |
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| T |
38016 |
gaaaatatatccgaaaagtaaaatagaaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcg |
37917 |
T |
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| Q |
222 |
tcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttctt |
321 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37916 |
tcttgtgttgatgaagaagaaaccactccctgcaacaaatgcaatggtgagttcatctagagaataaatcaactatgtgtatacctcaaataaatttctt |
37817 |
T |
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| Q |
322 |
agaagttgtgtttcaagct |
340 |
Q |
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| T |
37816 |
agaagttgtatttctagct |
37798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 270
Target Start/End: Complemental strand, 41023 - 40812
Alignment:
| Q |
59 |
gagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagatt |
158 |
Q |
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| T |
41023 |
gagaagaaattctcatatattttttgaagagacaaaaaaacttgtgttaactattaggagattgaaaacatttacaaaaattaaaaaagaaaaggagatt |
40924 |
T |
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| Q |
159 |
gagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaaca |
258 |
Q |
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| T |
40923 |
gagaaggttagaggttacttagggttaggattgcaatttgcaagcaaagttcgattctcttcgtgtcgtgtcgatggagaacaaatcaacggctgcaaca |
40824 |
T |
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| Q |
259 |
aatgcaatggtg |
270 |
Q |
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| T |
40823 |
aatgcaaaggtg |
40812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 49671 - 49523
Alignment:
| Q |
76 |
tatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggtta |
175 |
Q |
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| T |
49671 |
tatttttttaagagaaaacaaaacatatgttaactattgggagatcgaaaatatttccaaaaggtaaaatagaaaaggagattgagaaggtcattggtta |
49572 |
T |
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| Q |
176 |
cttagggttaggattgcaatttgcaagcaaagttctactctcttcgtct |
224 |
Q |
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| T |
49571 |
cttagggttcagattgcaatatacaagcaaagttcgactctcttcgtct |
49523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 153 - 270
Target Start/End: Complemental strand, 34572 - 34455
Alignment:
| Q |
153 |
gagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcct |
252 |
Q |
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| T |
34572 |
gagattgagaaggtcagtggttactttgggttaggattgaaatttgcaagcaaagttcgattctcttcatctcgtgtcgatgaagaagaaatcagcggct |
34473 |
T |
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| Q |
253 |
gcaacaaatgcaatggtg |
270 |
Q |
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| T |
34472 |
gcaacaaatgcaaaggtg |
34455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 49520 - 49427
Alignment:
| Q |
255 |
aacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
348 |
Q |
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| T |
49520 |
aacaaatgcaaaggtgagctcatctagagaagaagtcaactatgtgtatacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
49427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 13338974 - 13339124
Alignment:
| Q |
115 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
214 |
Q |
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|||||| |||||||| ||| || | ||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||| |
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| T |
13338974 |
ggagattgaaaatatttccaaacattaaaaaagaaaaggagattgagaaggttagtggttacttagggttagaattgcaatttgcaagtaaaatccgact |
13339073 |
T |
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| Q |
215 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaa |
265 |
Q |
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| T |
13339074 |
ctcttcgtctcgtgtcgatggagaagaaatcagaggctgcaacaattgcaa |
13339124 |
T |
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