View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14359_low_25 (Length: 356)
Name: NF14359_low_25
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14359_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 41 - 261
Target Start/End: Complemental strand, 51385657 - 51385436
Alignment:
| Q |
41 |
aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatccttaannnnnnnattaaactactcatacatgtggtgat |
139 |
Q |
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| T |
51385657 |
aattcatctggccaaattggatttgagatatgtcacagctcatggtaatgtgttctttgatccttaatttttttattgaagtacctatacatgttgtgat |
51385558 |
T |
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| Q |
140 |
tatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagt |
239 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |
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| T |
51385557 |
tatttttaaagaatgctattgtaaacattaatttgcattagtttattgtttgtctgtttatcatcttcaacaggtttcaaatatggagccaataaaaagt |
51385458 |
T |
|
| Q |
240 |
gataagggtagaaccttgaaag |
261 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
51385457 |
gacaagggtagaaccttgaaag |
51385436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 309
Target Start/End: Original strand, 14185525 - 14185719
Alignment:
| Q |
115 |
ttaaactactcatacatgtggtgattatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacaggt |
214 |
Q |
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||||||||| |||||||| ||||||| |||||||||||| | ||| ||||||| || | |||||||||||||||||||||||||||||| | | || |
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| T |
14185525 |
ttaaactacctatacatgttgtgattagttttaaagaatgatatagtagacattaagttataatagtttaatctttgtttgtttatcatcttctaaaagt |
14185624 |
T |
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| Q |
215 |
ttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattataacgttcctggtatgagttaaa |
309 |
Q |
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| T |
14185625 |
ttcatatatggaactaatacaaagtgacgagggtagaaccttaaacgaaggatgactgctatggaaatatgataatgttcctggtatgagttaaa |
14185719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 7607320 - 7607194
Alignment:
| Q |
183 |
taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac |
282 |
Q |
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||||||||||||||||||||||||| | | |||||| ||||||||| ||||||||||| ||||||||||||||||| |||| || ||||||||||||| |
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| T |
7607320 |
taatctttgtttgtttatcatcttctatatgtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat |
7607221 |
T |
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| Q |
283 |
attataacgttcctggtatgagttaaa |
309 |
Q |
| |
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| T |
7607220 |
atgataatgttcctggtatgagttaaa |
7607194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 31769880 - 31769754
Alignment:
| Q |
183 |
taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac |
282 |
Q |
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||||||||||||||||||||||||| | | |||||| ||||||||| ||||||||||| ||||||||||||||||| |||| || ||||||||||||| |
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| T |
31769880 |
taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat |
31769781 |
T |
|
| Q |
283 |
attataacgttcctggtatgagttaaa |
309 |
Q |
| |
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|| |||| ||||||||||||||||||| |
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| T |
31769780 |
atgataatgttcctggtatgagttaaa |
31769754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 27841322 - 27841257
Alignment:
| Q |
41 |
aattcatctggccaaattggattgggat-atgtcacagctcatagtaatgtgttctttgatcctta |
105 |
Q |
| |
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|||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||| |
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| T |
27841322 |
aattcatctgaccaaattggatttatgtcatgtcacagctcatagtagtgtgttctttgatcctta |
27841257 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 41811133 - 41811259
Alignment:
| Q |
183 |
taatctttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaac |
282 |
Q |
| |
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||||||||||||||||||||||||| | | |||||| ||||||||| ||||||||||| ||||||||||||||||| |||| || ||||||||||||| |
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| T |
41811133 |
taatctttgtttgtttatcatcttctataagtttcatatatggaactaatacaaagtgacaagggtagaaccttgaacgaaggatgactgctatggaaat |
41811232 |
T |
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| Q |
283 |
attataacgttcctggtatgagttaaa |
309 |
Q |
| |
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|| |||| ||||||||||||||||||| |
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| T |
41811233 |
atgataatgttcctggtatgagttaaa |
41811259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 2313651 - 2313529
Alignment:
| Q |
188 |
tttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattat |
287 |
Q |
| |
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||||| ||||| | |||||| |||||||||||| ||||| | |||||||||||| | |||| |||||||||||||||||||||| |||||||| | || |
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| T |
2313651 |
tttgtgtgtttgtgatcttctacaggtttcaaaactggaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatggaaatttgat |
2313552 |
T |
|
| Q |
288 |
aac-gttcctggtatgagttaaa |
309 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
2313551 |
aacacttcctggtatgagttaaa |
2313529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 114 - 309
Target Start/End: Original strand, 32445304 - 32445497
Alignment:
| Q |
114 |
attaaactactcatacatgtggtgattatttttaaagaatgctgctgtaaacattaaattgcattagtttaatctttgtttgtttatcatcttcaacagg |
213 |
Q |
| |
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|||||||||| |||||||| ||||||| ||||||||||| |||||| ||||| |||||| |||| ||| ||||| ||||| ||||||| ||||| |
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| T |
32445304 |
attaaactacctatacatgttgtgattagctttaaagaatgtaattgtaaa-attaagttgcataagtt-aat-tttgtgtgtttgtcatcttatacagg |
32445400 |
T |
|
| Q |
214 |
tttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattataac-gttcctggtatgagttaaa |
309 |
Q |
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||||||| | ||| | |||||||||||| | |||| |||||||||||||||||||||| |||| ||| | ||||| |||||||||||||||||| |
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| T |
32445401 |
tttcaaaactagaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatgtaaatttgataacacttcctggtatgagttaaa |
32445497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 309
Target Start/End: Complemental strand, 9262775 - 9262653
Alignment:
| Q |
188 |
tttgtttgtttatcatcttcaacaggtttcaaatatggaacctatacaaagtgataagggtagaaccttgaaagaagaattactgctatggaaacattat |
287 |
Q |
| |
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||||| ||||| | |||||| |||||||||||| ||||| | |||||||||||| | |||| |||||||||||||||||||||| |||||||| | || |
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| T |
9262775 |
tttgtgtgtttgtgatcttctacaggtttcaaaactggaagcaatacaaagtgatgatggtacaaccttgaaagaagaattactggtatggaaatttgat |
9262676 |
T |
|
| Q |
288 |
aac-gttcctggtatgagttaaa |
309 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
9262675 |
aacacttcctggtatgagttaaa |
9262653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 16360456 - 16360521
Alignment:
| Q |
41 |
aattcatctggccaaattggattgg-gatatgtcacagctcatagtaatgtgttctttgatcctta |
105 |
Q |
| |
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|||||||||| |||||||||||| || |||||||| ||||||||| |||||||||||||||||| |
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| T |
16360456 |
aattcatctgaccaaattggatttatgacatgtcacaactcatagtagtgtgttctttgatcctta |
16360521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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