View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14359_low_29 (Length: 332)

Name: NF14359_low_29
Description: NF14359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14359_low_29
NF14359_low_29
[»] chr4 (15 HSPs)
chr4 (1-159)||(6749666-6749826)
chr4 (214-316)||(6501745-6501847)
chr4 (227-316)||(6522057-6522146)
chr4 (225-316)||(6812384-6812475)
chr4 (214-316)||(6792938-6793040)
chr4 (219-316)||(6626244-6626341)
chr4 (1-114)||(6501483-6501599)
chr4 (214-316)||(6592659-6592761)
chr4 (223-302)||(6540906-6540985)
chr4 (214-302)||(6832907-6832995)
chr4 (1-36)||(6592358-6592393)
chr4 (1-36)||(6625989-6626024)
chr4 (221-316)||(6666036-6666131)
chr4 (1-31)||(6716353-6716383)
chr4 (260-316)||(6647626-6647682)
[»] scaffold0729 (1 HSPs)
scaffold0729 (214-316)||(5589-5691)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 6749826 - 6749666
Alignment:
Q  1 agaacacatcgtacatctttggctgaaacatcaaag-----taaaaatgaaaattacagcttacataatgggtagataaaattcttgataccactgatac 95  Q
    ||||||||||||||||||||||||||||||||||||     ||||||| ||||| ||   ||| |||||||||||  |||||||||||| ||||||||||    
T  6749826 agaacacatcgtacatctttggctgaaacatcaaaggaaagtaaaaattaaaatcac---ttatataatgggtagcgaaaattcttgatgccactgatac 6749730  T
Q  96 atcttaaactatgaggttacccaaaatttattctattactaatactcaattcacaatcttacta 159  Q
    || ||||  || ||||||||||||||||||||||||||||||   || |||||| |||||||||    
T  6749729 attttaacatacgaggttacccaaaatttattctattactaaatttccattcaccatcttacta 6749666  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 6501745 - 6501847
Alignment:
Q  214 cacacacactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgtt 313  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| |  ||||||||| |||||||||||||||| ||||||| |||||||  |||| ||||    
T  6501745 cacacacactagcactcacctgattggtcttattacttgattctctgttaatgatatctcttgccatggcttgtagcagaacatgcatttgaagcttgtt 6501844  T
Q  314 att 316  Q
    |||    
T  6501845 att 6501847  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 6522057 - 6522146
Alignment:
Q  227 actcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgttatt 316  Q
    |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||    
T  6522057 actcacctgattagtcttattacttgattccctcgtaatgatatctcttgccatggcttgtagaagaacatgcatttgaagcctgttatt 6522146  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 6812475 - 6812384
Alignment:
Q  225 ccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgttatt 316  Q
    |||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||| ||| ||||| |||||||    
T  6812475 ccactcacctgattagacatattacttgattccctcttaatgatatctcttgccatggcttgtagcagaacatgtatttcaagcttgttatt 6812384  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 6793040 - 6792938
Alignment:
Q  214 cacacacactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgtt 313  Q
    |||||||| |||||||||||| ||  |||||||| |||||||||  |||||||||  |||||||||||||||| ||||||| ||||||||||||| ||||    
T  6793040 cacacacaataccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgtt 6792941  T
Q  314 att 316  Q
    |||    
T  6792940 att 6792938  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 6626244 - 6626341
Alignment:
Q  219 acactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgttatt 316  Q
    ||||| ||||||||||||| |||||||||||||||||| | |||||||||| | |||||||| ||||| ||||||  ||||||| ||||| |||||||    
T  6626244 acactgccactcacctgatcagtcttattacttgattctctcttaatgatatcccttgccatcgcttgtagcagaccatgcatttcaagcttgttatt 6626341  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 6501483 - 6501599
Alignment:
Q  1 agaacacatcgtacatctttggctgaaacatcaaa-----gtaaaaatgaaaattacagcttacataatgggtagataaaattcttgataccactgatac 95  Q
    ||||||| |||||||||||||||||||||| ||||     |||||||| ||||| |||||||  |||   ||||| ||||||||||||| ||||||||||    
T  6501483 agaacacgtcgtacatctttggctgaaacaccaaaagaaagtaaaaattaaaatcacagctttgatac--ggtagctaaaattcttgatgccactgatac 6501580  T
Q  96 atcttaaactatgaggtta 114  Q
    ||| | |||||||||||||    
T  6501581 atcatcaactatgaggtta 6501599  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 6592659 - 6592761
Alignment:
Q  214 cacacacactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgtt 313  Q
    ||||||||  |||||||||||||| ||| ||||| |||||||  |  ||||||||| |||| ||||||||||| ||||||| ||| ||||||||| ||||    
T  6592659 cacacacaaaaccactcacctgatcagtgttattgcttgattttcttttaatgatatctctcgccatggcttgtagcagaacatgaattccaagcttgtt 6592758  T
Q  314 att 316  Q
    |||    
T  6592759 att 6592761  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 302
Target Start/End: Original strand, 6540906 - 6540985
Alignment:
Q  223 taccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcatt 302  Q
    |||||||||||||||  ||||| | ||||||||| | |||||| |||||||||||||||||||| |||| || |||||||    
T  6540906 taccactcacctgatcggtcttttgacttgattctctcttaattatacctcttgccatggcttgtagcataacatgcatt 6540985  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 6832995 - 6832907
Alignment:
Q  214 cacacacactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcatt 302  Q
    ||||||||| | ||||||||||||  |||||||||||||||| || | |||||| | |||||||||||| ||| |||| || |||||||    
T  6832995 cacacacaccaacactcacctgatcggtcttattacttgatttcctcctaatgacatctcttgccatggattgtagcaaaacatgcatt 6832907  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6592358 - 6592393
Alignment:
Q  1 agaacacatcgtacatctttggctgaaacatcaaag 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  6592358 agaacacatcatacatctttggctgaaacatcaaag 6592393  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6625989 - 6626024
Alignment:
Q  1 agaacacatcgtacatctttggctgaaacatcaaag 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6625989 agaacacatcgtacatctttggctaaaacatcaaag 6626024  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 6666131 - 6666036
Alignment:
Q  221 actaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgttatt 316  Q
    ||||||||||| ||||| |||||| |||||||||| ||   ||| |||| ||||||||||||||||  ||| || |||||||  |||| |||||||    
T  6666131 actaccactcatctgatcagtcttcttacttgattgccttgtaacgatatctcttgccatggcttgttgcataacatgcatttgaagcttgttatt 6666036  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6716383 - 6716353
Alignment:
Q  1 agaacacatcgtacatctttggctgaaacat 31  Q
    |||||||||||||||||||||||||||||||    
T  6716383 agaacacatcgtacatctttggctgaaacat 6716353  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 6647682 - 6647626
Alignment:
Q  260 cttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgttatt 316  Q
    |||||||||| |||||||||||||||| || |||  ||||||| ||||| |||||||    
T  6647682 cttaatgatatctcttgccatggcttgtagaagaccatgcatttcaagcttgttatt 6647626  T

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Target: scaffold0729 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 5589 - 5691
Alignment:
Q  214 cacacacactaccactcacctgattagtcttattacttgattcccgcttaatgatacctcttgccatggcttgaagcagaatatgcattccaagcctgtt 313  Q
    |||||||| |||||||||||| ||  |||||||| |||||||||  |||||||||  |||||||||||||||| ||||||| ||||||||||||| ||||    
T  5589 cacacacaataccactcaccttatctgtcttatttcttgattccttcttaatgatgtctcttgccatggcttgtagcagaacatgcattccaagcttgtt 5688  T
Q  314 att 316  Q
    |||    
T  5689 att 5691  T

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